RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 COPS2P61201 443 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 CHAF1BQ13112 559 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 UBAP2LQ14157 1087 aaKnown RBP12.43□□□□□ -0.42
CD44-203ENST00000278386 CPZQ66K79 652 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 SYVN1Q86TM6 617 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 ATCAYQ86WG3 371 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 CFAP206Q8IYR0 622 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 CCDC170Q8IYT3 715 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 NXPE1Q8N323 547 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 LILRA3Q8N6C8 439 aaPredicted RBP12.43□□□□□ -0.42
CD44-203ENST00000278386 OR8K5Q8NH50 307 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 CCDC110Q8TBZ0 833 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 LINC00615Q96LM1 132 aaPredicted RBP12.43□□□□□ -0.42
CD44-203ENST00000278386 PPM1MQ96MI6 270 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 COPS8Q99627 209 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 GPR87Q9BY21 358 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 VPS37BQ9H9H4 285 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 AKIRIN1Q9H9L7 192 aaPredicted RBP12.43□□□□□ -0.42
CD44-203ENST00000278386 KCND1Q9NSA2 647 aa12.43□□□□□ -0.42
CD44-203ENST00000278386 SNRNP200O75643 2136 aaKnown RBP12.43□□□□□ -0.42
CD44-203ENST00000278386 ARGFXA6NJG6 315 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 MATN2O00339 956 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 IFRD1O00458 451 aaPredicted RBP12.42□□□□□ -0.42
CD44-203ENST00000278386 LCA5LO95447 670 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 CYP2A7P20853 494 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 MC4RP32245 332 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 HADHAP40939 763 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 ZNF140P52738 457 aaPredicted RBP12.42□□□□□ -0.42
CD44-203ENST00000278386 XIAPP98170 497 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 GPS2Q13227 327 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 SEMA5AQ13591 1074 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 IL10RAQ13651 578 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 SPARCL1Q14515 664 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 UGT8Q16880 541 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 ZRANB3Q5FWF4 1079 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 RANBP10Q6VN20 620 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 SNX20Q7Z614 316 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 APLFQ8IW19 511 aaPredicted RBP12.42□□□□□ -0.42
CD44-203ENST00000278386 CARFQ8N187 725 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 ACVR1CQ8NER5 493 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 OR4E2Q8NGC2 313 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 HEXDCQ8WVB3 486 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 ZFPM2Q8WW38 1151 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 LCN9Q8WX39 176 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 ZNF501Q96CX3 271 aaPredicted RBP12.42□□□□□ -0.42
CD44-203ENST00000278386 CLIP3Q96DZ5 547 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 DNAJC1Q96KC8 554 aaKnown RBP12.42□□□□□ -0.42
CD44-203ENST00000278386 SPATA13Q96N96 652 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 PPP1R2P1Q96PQ5 205 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 FERD3LQ96RJ6 166 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 CCM2Q9BSQ5 444 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 HGH1Q9BTY7 390 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 SLC25A23Q9BV35 468 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 TRIM55Q9BYV6 548 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 OSBPL8Q9BZF1 889 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 SLC7A5P2Q9GIP4 190 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 SRMSQ9H3Y6 488 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 COG4Q9H9E3 785 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 ACSS2Q9NR19 701 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 LATS2Q9NRM7 1088 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 POMT2Q9UKY4 750 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 SNX7Q9UNH6 387 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 BTRCQ9Y297 605 aa12.42□□□□□ -0.42
CD44-203ENST00000278386 FER1L5A0AVI2 2057 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 CCDC66A2RUB6 948 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 SLC9B1P1A6NJY1 282 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 TMEM150CB9EJG8 249 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 BTN3A1O00481 513 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 MAST4O15021 2626 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 MAP3K7O43318 606 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 SGTAO43765 313 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 RECKO95980 971 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 PDGFAP04085 211 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 KLK3P07288 261 aaPredicted RBP12.41□□□□□ -0.42
CD44-203ENST00000278386 ATP1B2P14415 290 aaPredicted RBP12.41□□□□□ -0.42
CD44-203ENST00000278386 PTPN7P35236 360 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 PGDP52209 483 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 RWDD2BP57060 319 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 GSDMDP57764 484 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 ABRQ12979 859 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 PRAMEF17Q5VTA0 474 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 CAPRIN2Q6IMN6 1127 aaKnown RBP12.41□□□□□ -0.42
CD44-203ENST00000278386 ZNF449Q6P9G9 518 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 SARM1Q6SZW1 724 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 ARHGEF18Q6ZSZ5 1173 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 NAV2Q8IVL1 2488 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 EFCAB3Q8N7B9 438 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 THAP4Q8WY91 577 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 CPT1BQ92523 772 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 MIB2Q96AX9 1013 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 CHST8Q9H2A9 424 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 C1GALT1Q9NS00 363 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 ZDHHC3Q9NYG2 299 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 CCDC88CQ9P219 2028 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 FARSAQ9Y285 508 aaKnown RBP12.41□□□□□ -0.42
CD44-203ENST00000278386 PCDHA3Q9Y5H8 950 aa12.41□□□□□ -0.42
CD44-203ENST00000278386 SOWAHDA6NJG2 315 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 TJP3O95049 919 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 ACRV1P26436 265 aa12.4□□□□□ -0.42
CD44-203ENST00000278386 PTGIRP43119 386 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms