RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 FCGR1AP12314 374 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 MYCLP1P12525 358 aaPredicted RBP9.89□□□□□ -0.83
LIG3-201ENST00000262327 SLC2A4P14672 509 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 CCNA2P20248 432 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 TMED10P49755 219 aaKnown RBP9.89□□□□□ -0.83
LIG3-201ENST00000262327 RPL38P63173 70 aaKnown RBP9.89□□□□□ -0.83
LIG3-201ENST00000262327 SEMG2Q02383 582 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 EMX2Q04743 252 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 ACVR1Q04771 509 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 INAQ16352 499 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 AP5B1Q2VPB7 878 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 XKR7Q5GH72 579 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 FAM117BQ6P1L5 589 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 CYP20A1Q6UW02 462 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 SPESP1Q6UW49 350 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 BEND5Q7L4P6 421 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 SPATA19Q7Z5L4 167 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 PTRH1Q86Y79 214 aaKnown RBP9.89□□□□□ -0.83
LIG3-201ENST00000262327 HID1Q8IV36 788 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 LINC01599Q8WXQ3 324 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 APOL5Q9BWW9 433 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 LRRC3Q9BY71 257 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 CD320Q9NPF0 282 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 SELENONQ9NZV5 590 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.89□□□□□ -0.83
LIG3-201ENST00000262327 ZFP37Q9Y6Q3 630 aaPredicted RBP9.89□□□□□ -0.83
LIG3-201ENST00000262327 GSTA4O15217 222 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 CXCL10P02778 98 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 FUCA1P04066 466 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 GSNP06396 782 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 OCM2P0CE71 109 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 OCMP0CE72 109 aaPredicted RBP9.89□□□□□ -0.83
LIG3-201ENST00000262327 PRR35P0CG20 571 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 THRBP10828 461 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 PKMP14618 531 aaKnown RBP9.89□□□□□ -0.83
LIG3-201ENST00000262327 CTPS1P17812 591 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 TACR2P21452 398 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 HSPA7P48741 367 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 HLCSP50747 726 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 SGSHP51688 502 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 ZNF140P52738 457 aaPredicted RBP9.89□□□□□ -0.83
LIG3-201ENST00000262327 GPNMBQ14956 572 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 NR1D2Q14995 579 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 TGFBIQ15582 683 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 GLB1LQ6UWU2 654 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 GALNT7Q86SF2 657 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 CENPSQ8N2Z9 138 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 KRTCAP2Q8N6L1 136 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 TMCO5AQ8N6Q1 288 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 OR4F6Q8NGB9 312 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 GPR150Q8NGU9 434 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 OR6K2Q8NGY2 324 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 ADAMTS16Q8TE57 1224 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 FRS2Q8WU20 508 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 OSCP1Q8WVF1 389 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 TADA1Q96BN2 335 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 CGREF1Q99674 301 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 HEPHQ9BQS7 1158 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 CINPQ9BW66 212 aaPredicted RBP9.89□□□□□ -0.83
LIG3-201ENST00000262327 TPK1Q9H3S4 243 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 PCDH12Q9NPG4 1184 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.89□□□□□ -0.83
LIG3-201ENST00000262327 TMEM161AQ9NX61 479 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 DOCK4Q8N1I0 1966 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 MYO16Q9Y6X6 1858 aa9.89□□□□□ -0.83
LIG3-201ENST00000262327 FAM234BA2RU67 622 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 VPS26AO75436 327 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 PRLP01236 227 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 IRF1P10914 325 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 OGNP20774 298 aaKnown RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 HOXD9P28356 352 aaPredicted RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 LBX1P52954 281 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 EEFSECP57772 596 aaKnown RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 IL2P60568 153 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 CHRNB3Q05901 458 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 DAG1Q14118 895 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 TYSND1Q2T9J0 566 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 AASDHQ4L235 1098 aaPredicted RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 CTXN3Q4LDR2 81 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 VARS2Q5ST30 1063 aaKnown RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 XAF1Q6GPH4 301 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 USP51Q70EK9 711 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 FRA10AC1Q70Z53 315 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 ZFAND4Q86XD8 727 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 CROCCP3Q8IVE0 287 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 PEX5LQ8IYB4 626 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 CLDN19Q8N6F1 224 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 DDHD1Q8NEL9 900 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 CD200R1Q8TD46 325 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 BPIFB1Q8TDL5 484 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 NCLNQ969V3 563 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 NSUN3Q9H649 340 aaKnown RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 ATAD3AQ9NVI7 634 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 NLE1Q9NVX2 485 aaPredicted RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 RABL2AQ9UBK7 228 aaPredicted RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 ZNHIT2Q9UHR6 403 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 PRRC2BQ5JSZ5 2229 aaKnown RBP9.88□□□□□ -0.83
LIG3-201ENST00000262327 IGLV3-10A0A075B6K4 115 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 SYCE1LA8MT33 242 aa9.88□□□□□ -0.83
LIG3-201ENST00000262327 TLR5O60602 858 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms