RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PAAF1Q9BRP4 392 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 IRF2BPLQ9H1B7 796 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 ARNT2Q9HBZ2 717 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 CAPN14A8MX76 684 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 H0Y858 1186 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 SCELO95171 688 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 ATP5A1P25705 553 aaKnown RBP13.43□□□□□ -0.26
LDLR-201ENST00000252444 KLC1Q07866 573 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 FUT11Q495W5 492 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 MFSD6LQ8IWD5 586 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 TDHQ8IZJ6 230 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 HMGB4Q8WW32 186 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 COL4A5P29400 1685 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 NFATC2Q13469 925 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 LIPJQ5W064 366 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 C16orf62Q7Z3J2 963 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 SIDT2Q8NBJ9 832 aaKnown RBP13.43□□□□□ -0.26
LDLR-201ENST00000252444 OR6C4Q8NGE1 309 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 MAPK15Q8TD08 544 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 C2orf78A6NCI8 922 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 EIPR1Q53HC9 387 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 CYP2S1Q96SQ9 504 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 REEP1Q9H902 201 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 GULP1Q9UBP9 304 aa13.43□□□□□ -0.26
LDLR-201ENST00000252444 MAGEA13PA6NCF6 341 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 PRORSD1PA6NEY8 169 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 OR2AG2A6NM03 316 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 RFXANKO14593 260 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 ERVK-8P63133 956 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 CST6Q15828 149 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 POM121L1PQ3SYA9 428 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 TXNRD3NBQ6F5E7 133 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 RGMAQ96B86 450 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 ELSPBP1Q96BH3 223 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 THAP11Q96EK4 314 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 SCRN2Q96FV2 425 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 Q96MT0 163 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 CACNG4Q9UBN1 327 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 OARD1Q9Y530 152 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 A0A1W2PPM1 405 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 FAM234BA2RU67 622 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 LINC01553A4QN01 128 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 SCAMP3O14828 347 aaKnown RBP13.42□□□□□ -0.26
LDLR-201ENST00000252444 ZNF682O95780 498 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 PROCP04070 461 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 KHKP50053 298 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 POLR2JP52435 117 aaKnown RBP13.42□□□□□ -0.26
LDLR-201ENST00000252444 SLC34A1Q06495 639 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 CHIT1Q13231 466 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 DENND6BQ8NEG7 585 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 OR9A1PQ8NGU1 263 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 KXD1Q9BQD3 176 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 OSBPL10Q9BXB5 764 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 CARS2Q9HA77 564 aaKnown RBP13.42□□□□□ -0.26
LDLR-201ENST00000252444 TRIM39Q9HCM9 518 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 GMEB2Q9UKD1 530 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 ADAMTSL1Q8N6G6 1762 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 GRID2O43424 1007 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 HCRTO43612 131 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 TULP3O75386 442 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 CD63P08962 238 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 ZNF23P17027 643 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 GPR149Q86SP6 731 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 DEPDC4Q8N2C3 294 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 SPPL3Q8TCT6 385 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 ABHD8Q96I13 439 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 AP4S1Q9Y587 144 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 PIAS3Q9Y6X2 628 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 TTC36A6NLP5 189 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 DUXAA6NLW8 204 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 NRP2O60462 931 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 PRPS1L1P21108 318 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 NR1D2Q14995 579 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 ENPP7Q6UWV6 458 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 ZCCHC23Q6ZST2 131 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 HID1Q8IV36 788 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 CPNE9Q8IYJ1 553 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 NOL11Q9H8H0 719 aaKnown RBP13.42□□□□□ -0.26
LDLR-201ENST00000252444 RAPGEFL1Q9UHV5 662 aa13.42□□□□□ -0.26
LDLR-201ENST00000252444 LAMTOR5O43504 91 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 GALNT1Q10472 559 aaPredicted RBP13.41□□□□□ -0.26
LDLR-201ENST00000252444 LACTB2Q53H82 288 aaPredicted RBP13.41□□□□□ -0.26
LDLR-201ENST00000252444 GPRC6AQ5T6X5 926 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 TMEM164Q5U3C3 297 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 DHDDSQ86SQ9 333 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 PGAM4Q8N0Y7 254 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 OR4A15Q8NGL6 344 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 ZBED6CLQ96FA7 236 aaPredicted RBP13.41□□□□□ -0.26
LDLR-201ENST00000252444 METTL2AQ96IZ6 378 aaKnown RBP13.41□□□□□ -0.26
LDLR-201ENST00000252444 BLACEA4D250 179 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 COQ9O75208 318 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 LEFTY1O75610 366 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 AGXTP21549 392 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 WASP42768 502 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 RPS6KA3P51812 740 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 WNT7BP56706 349 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 GRIK2Q13002 908 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 DYNC1I2Q13409 638 aaKnown RBP13.41□□□□□ -0.26
LDLR-201ENST00000252444 CYB5D2Q8WUJ1 264 aa13.41□□□□□ -0.26
LDLR-201ENST00000252444 FAM3CQ92520 227 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms