RNA–Protein interactions for RNA: ENST00000625716.2

TCF4-249, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 359 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-249ENST00000625716 TMEM115Q12893 351 aaPredicted RBP6.3□□□□□ -1.4
TCF4-249ENST00000625716 NFATC2Q13469 925 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 KIR2DS5Q14953 304 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 CPSF6Q16630 551 aaKnown RBP eCLIP6.3□□□□□ -1.4
TCF4-249ENST00000625716 CLPPQ16740 277 aaPredicted RBP6.3□□□□□ -1.4
TCF4-249ENST00000625716 COL28A1Q2UY09 1125 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 ATP13A5Q4VNC0 1218 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 LDLRAP1Q5SW96 308 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 USP53Q70EK8 1073 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 CBLL1Q75N03 491 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 RAB11FIP2Q7L804 512 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 ADGRG6Q86SQ4 1221 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 C17orf82Q86X59 251 aaPredicted RBP6.3□□□□□ -1.4
TCF4-249ENST00000625716 TRAPPC5Q8IUR0 188 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 SFTPA2Q8IWL1 248 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 TRIM48Q8IWZ4 208 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 NAGSQ8N159 534 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 TTC30BQ8N4P2 665 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 ZNF398Q8TD17 642 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 DTX3LQ8TDB6 740 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 MAIP1Q8WWC4 291 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 PATE1Q8WXA2 126 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 TMEM159Q96B96 161 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 LIN37Q96GY3 246 aaPredicted RBP6.3□□□□□ -1.4
TCF4-249ENST00000625716 NAF1Q96HR8 494 aaKnown RBP6.3□□□□□ -1.4
TCF4-249ENST00000625716 SLC46A1Q96NT5 459 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 VPS35Q96QK1 796 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 CMKLR1Q99788 373 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 TBL1YQ9BQ87 522 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 APOL2Q9BQE5 337 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 TIMM29Q9BSF4 260 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 TMEM121Q9BTD3 319 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 FOXP3Q9BZS1 431 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 LRRC40Q9H9A6 602 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 IL26Q9NPH9 171 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 IL17CQ9P0M4 197 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 FEZ2Q9UHY8 353 aaPredicted RBP6.3□□□□□ -1.4
TCF4-249ENST00000625716 ZNF148Q9UQR1 794 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 DNAJC16Q9Y2G8 782 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 RNF114Q9Y508 228 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 PCDHGA8Q9Y5G5 932 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 ARL5AQ9Y689 179 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 CAPN6Q9Y6Q1 641 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 LRRK1Q38SD2 2015 aa6.3□□□□□ -1.4
TCF4-249ENST00000625716 PLXNB3Q9ULL4 1909 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 A0A087WV48 116 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 KRTAP4-8A0A0G2JLE6 195 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 GOLGA6L3A6NEY3 463 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 AGRPO00253 132 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 ACACBO00763 2458 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 CHUKO15111 745 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 B4GAT1O43505 415 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 TLX3O43711 291 aaPredicted RBP6.29□□□□□ -1.4
TCF4-249ENST00000625716 DUX1O43812 170 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 UGT1A9O60656 530 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 MTX2O75431 263 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 PRAMEF1O95521 474 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 IFNB1P01574 187 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 ITGA2BP08514 1039 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 F3P13726 295 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 XRCC1P18887 633 aaPredicted RBP6.29□□□□□ -1.4
TCF4-249ENST00000625716 UGT1A6P19224 532 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 UGT1A1P22309 533 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 UGT1A4P22310 534 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 CCKBRP32239 447 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 CSTF2P33240 577 aaKnown RBP eCLIP6.29□□□□□ -1.4
TCF4-249ENST00000625716 ADRA1AP35348 466 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 UGT1A3P35503 534 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 UGT1A5P35504 534 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 HALP42357 657 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 MAPK9P45984 424 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 FASLGP48023 281 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 CLCNKAP51800 687 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 MAPK10P53779 464 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 TMPRSS15P98073 1019 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 KLF1Q13351 362 aaPredicted RBP6.29□□□□□ -1.4
TCF4-249ENST00000625716 TRA2AQ13595 282 aaKnown RBP eCLIP6.29□□□□□ -1.4
TCF4-249ENST00000625716 SNX1Q13596 522 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 SEPT6Q14141 434 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 SPARCL1Q14515 664 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 NR1D2Q14995 579 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 CHRNA6Q15825 494 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 SEPT7Q16181 437 aaKnown RBP6.29□□□□□ -1.4
TCF4-249ENST00000625716 LONRF2Q1L5Z9 754 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 MEI1Q5TIA1 1274 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 NKAIN2Q5VXU1 208 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 IYDQ6PHW0 289 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 RANBP10Q6VN20 620 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 GSTA5Q7RTV2 222 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 B3GNT8Q7Z7M8 397 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 LINC00523Q86TU6 105 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 AMZ2Q86W34 360 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 SLC13A5Q86YT5 568 aaPredicted RBP6.29□□□□□ -1.4
TCF4-249ENST00000625716 SFRP1Q8N474 314 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 TAB3Q8N5C8 712 aaPredicted RBP6.29□□□□□ -1.4
TCF4-249ENST00000625716 CCDC89Q8N998 374 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 DNAAF3Q8N9W5 541 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 TRIM58Q8NG06 486 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 OR4K2Q8NGD2 314 aa6.29□□□□□ -1.4
TCF4-249ENST00000625716 GIMAP7Q8NHV1 300 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms