RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 DGKQP52824 942 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 NR6A1Q15406 480 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 XKR7Q5GH72 579 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 RARS2Q5T160 578 aaKnown RBP10.45□□□□□ -0.74
CUX1-221ENST00000622516 SLC2A7Q6PXP3 512 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 SERPINA13PQ6UXR4 307 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 MILR1Q7Z6M3 343 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 ADAMTSL2Q86TH1 951 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 DHFR2Q86XF0 187 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 CANT1Q8WVQ1 401 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 POF1BQ8WVV4 589 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 PBXIP1Q96AQ6 731 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 PYCR2Q96C36 320 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 CNBD2Q96M20 576 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 ZFP14Q9HCL3 533 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 WWOXQ9NZC7 414 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 SUCOQ9UBS9 1254 aaKnown RBP10.45□□□□□ -0.74
CUX1-221ENST00000622516 SARDHQ9UL12 918 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 ANGPTL3Q9Y5C1 460 aa10.45□□□□□ -0.74
CUX1-221ENST00000622516 TTC34A8MYJ7 566 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 SOCS5O75159 536 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 RSL1D1O76021 490 aaKnown RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 MT-ND1P03886 318 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 RHOP08100 348 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 MYOGP15173 224 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 CKMT2P17540 419 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 CCR7P32248 378 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 CTNNB1P35222 781 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 ZFP36L2P47974 494 aaKnown RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 KCNK10P57789 538 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 CDKL1Q00532 357 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 NFYCQ13952 458 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 BOP1Q14137 746 aaKnown RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 PTGR1Q14914 329 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 ATP6AP1LQ52LC2 224 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 MTX3Q5HYI7 312 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 SAMD4BQ5PRF9 694 aaKnown RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 MPP7Q5T2T1 576 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 GPRC6AQ5T6X5 926 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 C8orf82Q6P1X6 216 aaPredicted RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 GRASPQ7Z6J2 395 aaPredicted RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 VRK3Q8IV63 474 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 TMEM102Q8N9M5 508 aaPredicted RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 PROKR1Q8TCW9 393 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 EME1Q96AY2 570 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 LMLNQ96KR4 655 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 C1QTNF3Q9BXJ4 246 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 FAM126AQ9BYI3 521 aaPredicted RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 VCX3BQ9H321 246 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 SLC52A3Q9NQ40 469 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 TDP1Q9NUW8 608 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 UBAP1Q9NZ09 502 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 NUDT4Q9NZJ9 180 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 RNF11Q9Y3C5 154 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 LIN7AO14910 233 aaPredicted RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 RAD51BO15315 384 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 PABPC1P11940 636 aaKnown RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 NELFEP18615 380 aaKnown RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 DGKAP23743 735 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 RGS4P49798 205 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 RHDQ02161 417 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 PDK3Q15120 406 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 AP5B1Q2VPB7 878 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 CARD16Q5EG05 197 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 FOXB2Q5VYV0 432 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 ZFP1Q6P2D0 407 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 TPRG1Q6ZUI0 275 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 RALGPS2Q86X27 583 aaPredicted RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 BADQ92934 168 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 IRF7Q92985 503 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 ZNF382Q96SR6 550 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 CIB1Q99828 191 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 GPATCH1Q9BRR8 931 aaKnown RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 TMEM79Q9BSE2 394 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 VCXQ9H320 206 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 PIDD1Q9HB75 910 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 AIG1Q9NVV5 245 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 BCAP29Q9UHQ4 241 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 TMPRSS11EQ9UL52 423 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 POLR3HQ9Y535 204 aaPredicted RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 ZFC3H1O60293 1989 aaKnown RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 LTBP2Q14767 1821 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 CCDC154A6NI56 674 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 PEX1O43933 1283 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 PRR35P0CG20 571 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 HMOX2P30519 316 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 AKT1P31749 480 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 GJA8P48165 433 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 ATP4BP51164 291 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 POLR2JP52435 117 aaKnown RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 MESP2Q0VG99 397 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 TRAF3Q13114 568 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 RBBP5Q15291 538 aaKnown RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 CPSF6Q16630 551 aaKnown RBP eCLIP10.44□□□□□ -0.74
CUX1-221ENST00000622516 ZXDCQ2QGD7 858 aaPredicted RBP10.44□□□□□ -0.74
CUX1-221ENST00000622516 GRAMD4Q6IC98 578 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 Q6ZVL8 140 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 USP45Q70EL2 814 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 ADIPOR2Q86V24 386 aa10.44□□□□□ -0.74
CUX1-221ENST00000622516 MRPL43Q8N983 215 aaKnown RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms