RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CMKLR1Q99788 373 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 CCM2Q9BSQ5 444 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 RAB33BQ9H082 229 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 WWP1Q9H0M0 922 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 XAB2Q9HCS7 855 aaKnown RBP15.78■□□□□ 0.12
TRIM28-213ENST00000598355 MARCH4Q9P2E8 410 aaPredicted RBP15.78■□□□□ 0.12
TRIM28-213ENST00000598355 EPHA6Q9UF33 1036 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 PSMD13Q9UNM6 376 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 ZFYVE26Q68DK2 2539 aa15.78■□□□□ 0.12
TRIM28-213ENST00000598355 UBXN7O94888 489 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 TNFSF15O95150 251 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 SLC35G4P0C7Q5 338 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 HGFP14210 728 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 ITIH1P19827 911 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 IVDP26440 423 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 ETV5P41161 510 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 SARNPP82979 210 aaKnown RBP15.77■□□□□ 0.12
TRIM28-213ENST00000598355 AARS2Q5JTZ9 985 aaKnown RBP15.77■□□□□ 0.12
TRIM28-213ENST00000598355 AGGF1Q8N302 714 aaeCLIP15.77■□□□□ 0.12
TRIM28-213ENST00000598355 BMPERQ8N8U9 685 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 RCBTB1Q8NDN9 531 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 OR6P1Q8NGX9 317 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 RSC1A1Q92681 617 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 MFSD3Q96ES6 412 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 AHCYL2Q96HN2 611 aaKnown RBP15.77■□□□□ 0.12
TRIM28-213ENST00000598355 KIR3DX1Q9H7L2 352 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 CATSPERZQ9NTU4 200 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 RNF14Q9UBS8 474 aa15.77■□□□□ 0.12
TRIM28-213ENST00000598355 LIN7AO14910 233 aaPredicted RBP15.76■□□□□ 0.11
TRIM28-213ENST00000598355 NVLO15381 856 aaKnown RBP15.76■□□□□ 0.11
TRIM28-213ENST00000598355 OR1I1O60431 355 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 AVILO75366 819 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 FTH1P02794 183 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 RBMS1P29558 406 aaKnown RBP15.76■□□□□ 0.11
TRIM28-213ENST00000598355 ARCN1P48444 511 aaKnown RBP15.76■□□□□ 0.11
TRIM28-213ENST00000598355 CD151P48509 253 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 TYSND1Q2T9J0 566 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 FASTKD1Q53R41 847 aaKnown RBP15.76■□□□□ 0.11
TRIM28-213ENST00000598355 DUS1LQ6P1R4 473 aaKnown RBP15.76■□□□□ 0.11
TRIM28-213ENST00000598355 TMEM135Q86UB9 458 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 PLXDC1Q8IUK5 500 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 PPIL6Q8IXY8 311 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 AGBL5Q8NDL9 886 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 ZNF248Q8NDW4 579 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 C12orf66Q96MD2 445 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 TTC1Q99614 292 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 IMP3Q9NV31 184 aaKnown RBP15.76■□□□□ 0.11
TRIM28-213ENST00000598355 SEMA5BQ9P283 1151 aa15.76■□□□□ 0.11
TRIM28-213ENST00000598355 LOC400499M0QZD8 3231 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 FAM237BA0A1B0GVD1 139 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 SLC5A10A0PJK1 596 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 B4E171 279 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 CCDC188H7C350 402 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 DNALI1O14645 258 aaPredicted RBP15.75■□□□□ 0.11
TRIM28-213ENST00000598355 TOX3O15405 576 aaPredicted RBP15.75■□□□□ 0.11
TRIM28-213ENST00000598355 JMJD7P0C870 316 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 RPS3P23396 243 aaKnown RBP eCLIP15.75■□□□□ 0.116e-10■■■□□ 15.3
TRIM28-213ENST00000598355 TSPAN7P41732 249 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 TTPAP49638 278 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 GFERP55789 205 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 SYDE1Q6ZW31 735 aaPredicted RBP15.75■□□□□ 0.11
TRIM28-213ENST00000598355 PRSS42Q7Z5A4 293 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 PDZD3Q86UT5 571 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 HOOK3Q86VS8 718 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 CFAP206Q8IYR0 622 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 NCSTNQ92542 709 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 CAPZA3Q96KX2 299 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 C9orf72Q96LT7 481 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 RUNDC3BQ96NL0 473 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 P2RY12Q9H244 342 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 SIDT1Q9NXL6 827 aaKnown RBP15.75■□□□□ 0.11
TRIM28-213ENST00000598355 FAM8A1Q9UBU6 413 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 PISDQ9UG56 409 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 SLC24A2Q9UI40 661 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 PCDHGA3Q9Y5H0 932 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 HEBP2Q9Y5Z4 205 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 CFAP20Q9Y6A4 193 aaKnown RBP15.75■□□□□ 0.11
TRIM28-213ENST00000598355 NBEAQ8NFP9 2946 aa15.75■□□□□ 0.11
TRIM28-213ENST00000598355 ZCWPW2A0A1B0GU75 182 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 C9orf172C9J069 976 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 IQCJ-SCHIP1C9J366 451 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-213ENST00000598355 PRMT5O14744 637 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-213ENST00000598355 CD3EAPO15446 510 aaKnown RBP15.74■□□□□ 0.11
TRIM28-213ENST00000598355 KRT37O76014 449 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 OR56A5P0C7T3 313 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 FGF3P11487 239 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-213ENST00000598355 CCL4P13236 92 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 OGNP20774 298 aaKnown RBP15.74■□□□□ 0.11
TRIM28-213ENST00000598355 ACADLP28330 430 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 NDUFS1P28331 727 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 PDHA2P29803 388 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 SLC5A2P31639 672 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 PPARGP37231 505 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-213ENST00000598355 ETF1P62495 437 aaKnown RBP15.74■□□□□ 0.11
TRIM28-213ENST00000598355 PPP1R7Q15435 360 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 FOXR1Q6PIV2 292 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 SPACA3Q8IXA5 215 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 C17orf53Q8N3J3 647 aaPredicted RBP15.74■□□□□ 0.11
TRIM28-213ENST00000598355 LKAAEAR1Q8TD35 194 aa15.74■□□□□ 0.11
TRIM28-213ENST00000598355 SIGLEC10Q96LC7 697 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms