RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 PMS2P1A4D2B8 440 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 GOLGA8KD6RF30 607 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 F8W8V4 182 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 GOLGA8TH3BQL2 631 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 PRMT5O14744 637 aaPredicted RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 DXOO77932 396 aaKnown RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 USP1O94782 785 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 UBXN7O94888 489 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 THRAP10827 490 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 PREPP48147 710 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 LIMK2P53671 638 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 EIF3IQ13347 325 aaKnown RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 TYSND1Q2T9J0 566 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 CAPRIN2Q6IMN6 1127 aaKnown RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 MRNIPQ6NTE8 343 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 TMEM71Q6P5X7 295 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 WDR74Q6RFH5 385 aaPredicted RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 ZNF572Q7Z3I7 529 aaPredicted RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 PROSER1Q86XN7 944 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 ELMO1Q92556 727 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 STAMBPL1Q96FJ0 436 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 SNF8Q96H20 258 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 PRR11Q96HE9 360 aaPredicted RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 IL1RAPL1Q9NZN1 696 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 OGFRQ9NZT2 677 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 ZCWPW2A0A1B0GU75 182 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 EFCAB8A8MWE9 144 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 SMAPO00193 183 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 LIN7AO14910 233 aaPredicted RBP14.23□□□□□ -0.13
VRK3-206ENST00000594090 PLD2O14939 933 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 NDUFS3O75489 264 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 BANF1O75531 89 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 SEC31AO94979 1220 aaKnown RBP14.23□□□□□ -0.13
VRK3-206ENST00000594090 OGNP20774 298 aaKnown RBP14.23□□□□□ -0.13
VRK3-206ENST00000594090 ITGA8P53708 1063 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 DHX9Q08211 1270 aaKnown RBP14.23□□□□□ -0.13
VRK3-206ENST00000594090 TRA2AQ13595 282 aaKnown RBP eCLIP14.23□□□□□ -0.13
VRK3-206ENST00000594090 BOP1Q14137 746 aaKnown RBP14.23□□□□□ -0.13
VRK3-206ENST00000594090 DNAJC21Q5F1R6 531 aaKnown RBP14.23□□□□□ -0.13
VRK3-206ENST00000594090 HIBCHQ6NVY1 386 aaPredicted RBP14.23□□□□□ -0.13
VRK3-206ENST00000594090 ZNF449Q6P9G9 518 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 RAB11FIP2Q7L804 512 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 SDCCAG8Q86SQ7 713 aaPredicted RBP14.23□□□□□ -0.13
VRK3-206ENST00000594090 LKAAEAR1Q8TD35 194 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 NCSTNQ92542 709 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 TRIM44Q96DX7 344 aaPredicted RBP14.23□□□□□ -0.13
VRK3-206ENST00000594090 TSSK1BQ9BXA7 367 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 TRIM31Q9BZY9 425 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 P2RY12Q9H244 342 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 GNPTGQ9UJJ9 305 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 ZMIZ1Q9ULJ6 1067 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 LOXL2Q9Y4K0 774 aa14.23□□□□□ -0.13
VRK3-206ENST00000594090 MN1Q10571 1320 aaPredicted RBP14.22□□□□□ -0.13
VRK3-206ENST00000594090 KNTC1P50748 2209 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 UBA6A0AVT1 1052 aaPredicted RBP14.22□□□□□ -0.13
VRK3-206ENST00000594090 FAM187AA6NFU0 413 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 TAF4O00268 1085 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 IFRD1O00458 451 aaPredicted RBP14.22□□□□□ -0.13
VRK3-206ENST00000594090 RAD51CO43502 376 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 ITGB6P18564 788 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 PGAM1P18669 254 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 RPS3P23396 243 aaKnown RBP eCLIP14.22□□□□□ -0.13
VRK3-206ENST00000594090 MPSTP25325 297 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 PDHA2P29803 388 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 RPL21P46778 160 aaKnown RBP14.22□□□□□ -0.13
VRK3-206ENST00000594090 CAPZBP47756 277 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 CD151P48509 253 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 MRPS25P82663 173 aaKnown RBP14.22□□□□□ -0.13
VRK3-206ENST00000594090 C16orf72Q14CZ0 275 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 BRD3Q15059 726 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 PLCL1Q15111 1095 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 MSS51Q4VC12 460 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 SYTL3Q4VX76 610 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 RNF187Q5TA31 235 aaPredicted RBP14.22□□□□□ -0.13
VRK3-206ENST00000594090 NEPROQ6NW34 567 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 FOXR1Q6PIV2 292 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 IGF2-ASQ6U949 168 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 PDZD3Q86UT5 571 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 LRRC6Q86X45 466 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 CILP2Q8IUL8 1156 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 LSMEM2Q8N112 164 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 FBXO39Q8N4B4 442 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 RCBTB1Q8NDN9 531 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 LPGAT1Q92604 370 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 RSC1A1Q92681 617 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 TMEM159Q96B96 161 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 TCF12Q99081 682 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 CMKLR1Q99788 373 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 CARD6Q9BX69 1037 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 KIR3DX1Q9H7L2 352 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 ASCL3Q9NQ33 180 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 PDP2Q9P2J9 529 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 CDC23Q9UJX2 597 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 HEBP2Q9Y5Z4 205 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 KIF26BQ2KJY2 2108 aa14.22□□□□□ -0.13
VRK3-206ENST00000594090 SLC5A10A0PJK1 596 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 IQCF5A8MTL0 148 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 AGRPO00253 132 aa14.21□□□□□ -0.13
VRK3-206ENST00000594090 HGSO14964 777 aaPredicted RBP14.21□□□□□ -0.13
VRK3-206ENST00000594090 TP73O15350 636 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms