RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 HOMER3Q9NSC5 361 aa12.11□□□□□ -0.47
SS18-225ENST00000585121 PIH1D1Q9NWS0 290 aaKnown RBP12.11□□□□□ -0.47
SS18-225ENST00000585121 SMARCAL1Q9NZC9 954 aa12.11□□□□□ -0.47
SS18-225ENST00000585121 DRG1Q9Y295 367 aaKnown RBP12.11□□□□□ -0.47
SS18-225ENST00000585121 CFAP20Q9Y6A4 193 aaKnown RBP12.11□□□□□ -0.47
SS18-225ENST00000585121 SCN8AQ9UQD0 1980 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 TRBV5-4A0A0C4DH59 114 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 MROH6A6NGR9 719 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 CEP104O60308 925 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 RAD1O60671 282 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 AP2A2O94973 939 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 FGGP02679 453 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 MSNP26038 577 aaKnown RBP12.1□□□□□ -0.47
SS18-225ENST00000585121 MAP4P27816 1152 aaKnown RBP12.1□□□□□ -0.47
SS18-225ENST00000585121 PPARGP37231 505 aaPredicted RBP12.1□□□□□ -0.47
SS18-225ENST00000585121 LEPRP48357 1165 aaKnown RBP12.1□□□□□ -0.47
SS18-225ENST00000585121 ARL4DP49703 201 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 C19orf57Q0VDD7 668 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 SEMA5AQ13591 1074 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 LYPLAL1Q5VWZ2 237 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 KIAA1614Q5VZ46 1190 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 DRICH1Q6PGQ1 229 aaPredicted RBP12.1□□□□□ -0.47
SS18-225ENST00000585121 FAM92BQ6ZTR7 304 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 NLRP9Q7RTR0 991 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 NLGN4XQ8N0W4 816 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 NLGN4YQ8NFZ3 816 aaPredicted RBP12.1□□□□□ -0.47
SS18-225ENST00000585121 GPR150Q8NGU9 434 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 NAT14Q8WUY8 206 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 UBXN4Q92575 508 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 NKD1Q969G9 470 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 PMEPA1Q969W9 287 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 KIAA1143Q96AT1 154 aaPredicted RBP12.1□□□□□ -0.47
SS18-225ENST00000585121 EFHD1Q9BUP0 239 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 ZNF768Q9H5H4 540 aaKnown RBP12.1□□□□□ -0.47
SS18-225ENST00000585121 PPP2R2CQ9Y2T4 447 aa12.1□□□□□ -0.47
SS18-225ENST00000585121 IGLV3-16A0A075B6K0 115 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 UBA6A0AVT1 1052 aaPredicted RBP12.09□□□□□ -0.47
SS18-225ENST00000585121 CCDC78A2IDD5 438 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 AP3B1O00203 1094 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 APRTP07741 180 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 ADRA1DP25100 572 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 NSG1P42857 185 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 CDKN1CP49918 316 aaPredicted RBP12.09□□□□□ -0.47
SS18-225ENST00000585121 ARSDP51689 593 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 CCZ1BP86790 482 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 CCZ1P86791 482 aaPredicted RBP12.09□□□□□ -0.47
SS18-225ENST00000585121 PRKAA1Q13131 559 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 RPA4Q13156 261 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 ITIH4Q14624 930 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 IL11RAQ14626 422 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 CCDC38Q502W7 563 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 DNTTIP2Q5QJE6 756 aaKnown RBP12.09□□□□□ -0.47
SS18-225ENST00000585121 OOSP2Q86WS3 158 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 PPHLN1Q8NEY8 458 aaKnown RBP12.09□□□□□ -0.47
SS18-225ENST00000585121 RANBP9Q96S59 729 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 CD180Q99467 661 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 ARHGAP9Q9BRR9 750 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 HRASLS2Q9NWW9 162 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 PILRAQ9UKJ1 303 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 RIMKLBQ9ULI2 386 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 PCDHGA4Q9Y5G9 962 aa12.09□□□□□ -0.47
SS18-225ENST00000585121 SGTAO43765 313 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 STK17BO94768 372 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 FTH1P02794 183 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 ETS1P14921 441 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 PSMA3P25788 255 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 PRAMEP78395 509 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 SRSF6Q13247 344 aaKnown RBP12.08□□□□□ -0.48
SS18-225ENST00000585121 COL9A2Q14055 689 aaPredicted RBP12.08□□□□□ -0.48
SS18-225ENST00000585121 DBN1Q16643 649 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 TSTD2Q5T7W7 516 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 CAPRIN2Q6IMN6 1127 aaKnown RBP12.08□□□□□ -0.48
SS18-225ENST00000585121 AFTPHQ6ULP2 937 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 XKR5Q6UX68 686 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 RASGRP3Q8IV61 690 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 PIANPQ8IYJ0 282 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 ESX1Q8N693 406 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 SIDT2Q8NBJ9 832 aaKnown RBP12.08□□□□□ -0.48
SS18-225ENST00000585121 SPDYE1Q8NFV5 336 aaPredicted RBP12.08□□□□□ -0.48
SS18-225ENST00000585121 OR6P1Q8NGX9 317 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 KLHL6Q8WZ60 621 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 TTC9Q92623 222 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 HDAC10Q969S8 669 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 OR6C1Q96RD1 312 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 FERD3LQ96RJ6 166 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 TLR10Q9BXR5 811 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 KIR3DX1Q9H7L2 352 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 COG4Q9H9E3 785 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 APMAPQ9HDC9 416 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 PDE7BQ9NP56 450 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 CASS4Q9NQ75 786 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 SIDT1Q9NXL6 827 aaKnown RBP12.08□□□□□ -0.48
SS18-225ENST00000585121 SLC24A2Q9UI40 661 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 ANAPC5Q9UJX4 755 aa12.08□□□□□ -0.48
SS18-225ENST00000585121 TMEM184BQ9Y519 407 aaPredicted RBP12.08□□□□□ -0.48
SS18-225ENST00000585121 CCDC162PA2VCL2 907 aa12.07□□□□□ -0.48
SS18-225ENST00000585121 OR6C74A6NCV1 312 aa12.07□□□□□ -0.48
SS18-225ENST00000585121 OR5K3A6NET4 321 aa12.07□□□□□ -0.48
SS18-225ENST00000585121 KIF1CO43896 1103 aaKnown RBP12.07□□□□□ -0.48
SS18-225ENST00000585121 ITGB2P05107 769 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms