RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 OOSP2Q86WS3 158 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 SLITRK4Q8IW52 837 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 MPP5Q8N3R9 675 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 CLDN19Q8N6F1 224 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 OTUD6BQ8N6M0 293 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 ZSCAN1Q8NBB4 408 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 GLIS1Q8NBF1 620 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 OR13J1Q8NGT2 312 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 COG1Q8WTW3 980 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 USP7Q93009 1102 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 PRR11Q96HE9 360 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 NAF1Q96HR8 494 aaKnown RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 MS4A14Q96JA4 679 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 PDLIM2Q96JY6 352 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 PANX3Q96QZ0 392 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 TAAR9Q96RI9 348 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 NAPGQ99747 312 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 ZPBPQ9BS86 351 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 RAB33BQ9H082 229 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 WWP1Q9H0M0 922 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 KCNF1Q9H3M0 494 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 KIR3DX1Q9H7L2 352 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 XAB2Q9HCS7 855 aaKnown RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 ASCL3Q9NQ33 180 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 CHRAC1Q9NRG0 131 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 CATSPERZQ9NTU4 200 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 SLC39A1Q9NY26 324 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 SCHIP1Q9P0W5 487 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 ZNF624Q9P2J8 865 aaPredicted RBP4.28□□□□□ -1.72
SNX1-205ENST00000559339 RNF14Q9UBS8 474 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 KLHL3Q9UH77 587 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 ACSL6Q9UKU0 697 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 PSMD13Q9UNM6 376 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 VPS9D1Q9Y2B5 631 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 WDR37Q9Y2I8 494 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 TCAF1Q9Y4C2 921 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 MRFAP1Q9Y605 127 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 SAR1BQ9Y6B6 198 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 DMXL2Q8TDJ6 3036 aa4.28□□□□□ -1.72
SNX1-205ENST00000559339 MN1Q10571 1320 aaPredicted RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 ANKRD11Q6UB99 2663 aaPredicted RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 PRAMEF33A0A0G2JMD5 474 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 TEX51A0A1B0GUA7 166 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 UBA6A0AVT1 1052 aaPredicted RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 CCDC162PA2VCL2 907 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 OR6C74A6NCV1 312 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 OR51F1A6NGY5 319 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 PRR19A6NJB7 356 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 EIF4E1BA6NMX2 242 aaKnown RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 B4E171 279 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 H3BMM5 538 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 CCDC188H7C350 402 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 SMAPO00193 183 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 PRMT5O14744 637 aaPredicted RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 NDC80O14777 642 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 ZNF185O15231 689 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 CASC3O15234 703 aaKnown RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 CD3EAPO15446 510 aaKnown RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 TLX3O43711 291 aaPredicted RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 PRAMEF10O60809 474 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 NDUFS3O75489 264 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 KRT37O76014 449 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 VAPBO95292 243 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 C9P02748 559 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 APOA4P06727 396 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 ANKRD34CP0C6C1 535 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 LIPCP11150 499 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 FGF3P11487 239 aaPredicted RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 PSMA3P25788 255 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 MGAT1P26572 445 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 FOXN2P32314 431 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 CSF2RBP32927 897 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 TSPAN7P41732 249 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 CDKN1CP49918 316 aaPredicted RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 ATP1A2P50993 1020 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 ARSDP51689 593 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 TERF1P54274 439 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 CRADDP78560 199 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 DR1Q01658 176 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 TLE3Q04726 772 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 ACVR1Q04771 509 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 FOXM1Q08050 763 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 HSPA14Q0VDF9 509 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 BOP1Q14137 746 aaKnown RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 DHX34Q14147 1143 aaKnown RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 IL11RAQ14626 422 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 C16orf72Q14CZ0 275 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 BRD3Q15059 726 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 RPE65Q16518 533 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 COL28A1Q2UY09 1125 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 DNAJC21Q5F1R6 531 aaKnown RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 DNTTIP2Q5QJE6 756 aaKnown RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 TMTC4Q5T4D3 741 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 CACHD1Q5VU97 1274 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 PAPD7Q5XG87 772 aaKnown RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 TTC23LQ6PF05 361 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 C19orf48Q6RUI8 117 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 CEACAM20Q6UY09 585 aa4.27□□□□□ -1.73
SNX1-205ENST00000559339 ZNF574Q6ZN55 896 aaPredicted RBP4.27□□□□□ -1.73
SNX1-205ENST00000559339 CCDC81Q6ZN84 652 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms