RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 GET4Q7L5D6 327 aaPredicted RBP3.43□□□□□ -1.86
USP48-215ENST00000534705 TAOK1Q7L7X3 1001 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 TBC1D1Q86TI0 1168 aaPredicted RBP3.43□□□□□ -1.86
USP48-215ENST00000534705 EXOC3L1Q86VI1 746 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 TDRPQ86YL5 185 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 CHERPQ8IWX8 916 aaKnown RBP3.43□□□□□ -1.86
USP48-215ENST00000534705 CNTROBQ8N137 903 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 PDCL2Q8N4E4 241 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 TTC30BQ8N4P2 665 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 PCYOX1LQ8NBM8 494 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 CADM4Q8NFZ8 388 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 SPATA22Q8NHS9 363 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 TDRD7Q8NHU6 1098 aaKnown RBP3.43□□□□□ -1.86
USP48-215ENST00000534705 HUS1BQ8NHY5 278 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 LNX1Q8TBB1 728 aaPredicted RBP3.43□□□□□ -1.86
USP48-215ENST00000534705 NEK9Q8TD19 979 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 TANKQ92844 425 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 TUBA1CQ9BQE3 449 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 IFIH1Q9BYX4 1025 aaKnown RBP3.43□□□□□ -1.86
USP48-215ENST00000534705 GLIS2Q9BZE0 524 aaPredicted RBP3.43□□□□□ -1.86
USP48-215ENST00000534705 ANKRD2Q9GZV1 360 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 COA1Q9GZY4 146 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 RETREG1Q9H6L5 497 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 PLEKHA5Q9HAU0 1116 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 ASAH2Q9NR71 780 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 IRAK4Q9NWZ3 460 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 NKIRAS2Q9NYR9 191 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 TAS2R10Q9NYW0 307 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 RAI14Q9P0K7 980 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 CGNQ9P2M7 1197 aaKnown RBP3.43□□□□□ -1.86
USP48-215ENST00000534705 CTNNA3Q9UI47 895 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 PA2G4Q9UQ80 394 aaKnown RBP3.43□□□□□ -1.86
USP48-215ENST00000534705 ERVK-11Q9UQG0 969 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 VDAC3Q9Y277 283 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 PCDHAC2Q9Y5I4 1007 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 CENPFP49454 3210 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 MROH5Q6ZUA9 1318 aa3.43□□□□□ -1.86
USP48-215ENST00000534705 TNRC18O15417 2968 aaPredicted RBP3.42□□□□□ -1.86
USP48-215ENST00000534705 ALPK3Q96L96 1907 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 MCM3APO60318 1980 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 A0A087WYN8 130 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 A6NLC8 198 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 B4E171 279 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 F5H0A9 414 aaPredicted RBP3.42□□□□□ -1.86
USP48-215ENST00000534705 MID1O15344 667 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 SEC14L5O43304 696 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 BUB3O43684 328 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 PLOD3O60568 738 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 CIAO1O76071 339 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 PLGP00747 810 aaPredicted RBP3.42□□□□□ -1.86
USP48-215ENST00000534705 UBTFL1P0CB47 393 aaPredicted RBP3.42□□□□□ -1.86
USP48-215ENST00000534705 MSNP26038 577 aaKnown RBP3.42□□□□□ -1.86
USP48-215ENST00000534705 TSPAN7P41732 249 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 GYG1P46976 350 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 CLCNKAP51800 687 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 BRWD1-AS2P59051 145 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 FKBP1AP62942 108 aaKnown RBP3.42□□□□□ -1.86
USP48-215ENST00000534705 CCNG2Q16589 344 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 CTF1Q16619 201 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 ZNF718Q3SXZ3 478 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 FAM69AQ5T7M9 428 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 GGNBP1Q5YKI7 109 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 ACAD10Q6JQN1 1059 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 TMCO3Q6UWJ1 677 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 QSOX2Q6ZRP7 698 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 FOXRED2Q8IWF2 684 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 NKAIN3Q8N8D7 197 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 SECTM1Q8WVN6 248 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 SORCS1Q8WY21 1168 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 C3orf30Q96M34 536 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 TREX2Q9BQ50 279 aaPredicted RBP3.42□□□□□ -1.86
USP48-215ENST00000534705 KXD1Q9BQD3 176 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 STRA6Q9BX79 667 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 PAIP1Q9H074 479 aaKnown RBP3.42□□□□□ -1.86
USP48-215ENST00000534705 TKTL2Q9H0I9 626 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 SLC25A18Q9H1K4 315 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 RANBP17Q9H2T7 1088 aaKnown RBP3.42□□□□□ -1.86
USP48-215ENST00000534705 EVA1AQ9H8M9 152 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 MMP25Q9NPA2 562 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 HINT3Q9NQE9 182 aaKnown RBP3.42□□□□□ -1.86
USP48-215ENST00000534705 SH3GLB2Q9NR46 395 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 DONSONQ9NYP3 566 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 MALT1Q9UDY8 824 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 TINAGQ9UJW2 476 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 RCOR1Q9UKL0 485 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 ARHGAP26Q9UNA1 814 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 AAR2Q9Y312 384 aaKnown RBP3.42□□□□□ -1.86
USP48-215ENST00000534705 SNX9Q9Y5X1 595 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 HTTP42858 3142 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 MYO3BQ8WXR4 1341 aa3.42□□□□□ -1.86
USP48-215ENST00000534705 RFX7Q2KHR2 1363 aa3.41□□□□□ -1.86
USP48-215ENST00000534705 LCTP09848 1927 aa3.41□□□□□ -1.86
USP48-215ENST00000534705 WDR81Q562E7 1941 aa3.41□□□□□ -1.86
USP48-215ENST00000534705 A0A1W2PRG0 241 aa3.41□□□□□ -1.86
USP48-215ENST00000534705 IPO8O15397 1037 aaKnown RBP3.41□□□□□ -1.86
USP48-215ENST00000534705 ZBED4O75132 1171 aa3.41□□□□□ -1.86
USP48-215ENST00000534705 SEC14L2O76054 403 aa3.41□□□□□ -1.86
USP48-215ENST00000534705 GFPT2O94808 682 aa3.41□□□□□ -1.86
USP48-215ENST00000534705 ZNF432O94892 652 aa3.41□□□□□ -1.86
USP48-215ENST00000534705 REC8O95072 547 aa3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms