RNA–Protein interactions for RNA: ENST00000510737.1

USP53-206, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 5

Gene USP53, Length 534 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-206ENST00000510737 ITGB3BPQ13352 177 aaPredicted RBP6.52□□□□□ -1.37
USP53-206ENST00000510737 RBM39Q14498 530 aaKnown RBP6.52□□□□□ -1.37
USP53-206ENST00000510737 GALNTL6Q49A17 601 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 GXYLT1Q4G148 440 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 PPM1LQ5SGD2 360 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 VITQ6UXI7 678 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 TRMT1LQ7Z2T5 733 aaKnown RBP6.52□□□□□ -1.37
USP53-206ENST00000510737 ZNF114Q8NC26 417 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 ESR2Q92731 530 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 TMEM18Q96B42 140 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 CLSTN3Q9BQT9 956 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 LRRCC1Q9C099 1032 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 MIOSQ9NXC5 875 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 GDE1Q9NZC3 331 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 FBXW11Q9UKB1 542 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 TEX15Q9BXT5 2789 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 SPTA1P02549 2419 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 COL1A2P08123 1366 aa6.52□□□□□ -1.37
USP53-206ENST00000510737 NOTCH3Q9UM47 2321 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 COL4A2P08572 1712 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 A0A087WV48 116 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 NPIPB11E5RHQ5 1161 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 ADAM12O43184 909 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 CEBPBP17676 345 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 PSMC3P17980 439 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 GSTM2P28161 218 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 HOXA9P31269 272 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 RDXP35241 583 aaKnown RBP6.51□□□□□ -1.37
USP53-206ENST00000510737 ALKBH1Q13686 389 aaKnown RBP6.51□□□□□ -1.37
USP53-206ENST00000510737 TWF2Q6IBS0 349 aaKnown RBP6.51□□□□□ -1.37
USP53-206ENST00000510737 PRSS55Q6UWB4 352 aaPredicted RBP6.51□□□□□ -1.37
USP53-206ENST00000510737 CCDC60Q8IWA6 550 aaPredicted RBP6.51□□□□□ -1.37
USP53-206ENST00000510737 FTSJ3Q8IY81 847 aaKnown RBP6.51□□□□□ -1.37
USP53-206ENST00000510737 SYTL1Q8IYJ3 562 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 GPR65Q8IYL9 337 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 LSM14AQ8ND56 463 aaKnown RBP6.51□□□□□ -1.37
USP53-206ENST00000510737 FAM71BQ8TC56 605 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 ARRDC3Q96B67 414 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 SGCZQ96LD1 299 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 MSTO1Q9BUK6 570 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 ZFP14Q9HCL3 533 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.51□□□□□ -1.37
USP53-206ENST00000510737 UPB1Q9UBR1 384 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 MYO9AB2RTY4 2548 aa6.51□□□□□ -1.37
USP53-206ENST00000510737 NFASCO94856 1347 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 CCDC194A0A1B0GVG4 234 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 ZNF263O14978 683 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 HMMRO75330 724 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 RHOBTB1O94844 696 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 PCP11498 1178 aaKnown RBP6.5□□□□□ -1.37
USP53-206ENST00000510737 DAOP14920 347 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 PCP4P48539 62 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 PNLIPRP1P54315 467 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 ARL16Q0P5N6 197 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 MYBPHQ13203 477 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 DRP2Q13474 957 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 SPARCL1Q14515 664 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 USP41Q3LFD5 358 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 TBRG1Q3YBR2 411 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 IQCA1Q86XH1 822 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 RBFAQ8N0V3 343 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 LNX1Q8TBB1 728 aaPredicted RBP6.5□□□□□ -1.37
USP53-206ENST00000510737 URGCPQ8TCY9 931 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 PIBF1Q8WXW3 757 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 TCEAL4Q96EI5 215 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 TXNDC15Q96J42 360 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 MXRA8Q9BRK3 442 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 SDF4Q9BRK5 362 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 NPFFR1Q9GZQ6 430 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 PRORYQ9H606 182 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 CLK4Q9HAZ1 481 aaKnown RBP6.5□□□□□ -1.37
USP53-206ENST00000510737 ZNF302Q9NR11 478 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 KLQ9UEF7 1012 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 F5P12259 2224 aa6.5□□□□□ -1.37
USP53-206ENST00000510737 RELNP78509 3460 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 DYTNA2CJ06 578 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 TARSL2A2RTX5 802 aaKnown RBP6.49□□□□□ -1.37
USP53-206ENST00000510737 MYBPHLA2RUH7 354 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 SPECC1L-ADORA2AF8WAN1 911 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 DDX39AO00148 427 aaKnown RBP6.49□□□□□ -1.37
USP53-206ENST00000510737 TULP2O00295 520 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 MAGEB2O15479 319 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 ANP32CO43423 234 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 RFC1P35251 1148 aaPredicted RBP6.49□□□□□ -1.37
USP53-206ENST00000510737 SNTA1Q13424 505 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 PON2Q15165 354 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 SETMARQ53H47 684 aaPredicted RBP6.49□□□□□ -1.37
USP53-206ENST00000510737 LIN9Q5TKA1 542 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 FUT10Q6P4F1 479 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 C11orf96Q7Z7L8 435 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 MFSD6LQ8IWD5 586 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 SCAMP5Q8TAC9 235 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 C8orf48Q96LL4 319 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 IL17FQ96PD4 163 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 MAP7D2Q96T17 732 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 GCOM2Q9BZD3 368 aaPredicted RBP6.49□□□□□ -1.37
USP53-206ENST00000510737 OBP2BQ9NPH6 170 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 CDC23Q9UJX2 597 aa6.49□□□□□ -1.37
USP53-206ENST00000510737 PIN4Q9Y237 131 aaKnown RBP6.49□□□□□ -1.37
USP53-206ENST00000510737 ATMQ13315 3056 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms