RNA–Protein interactions for RNA: ENST00000506244.5

SNCA-209, Transcript of synuclein alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene SNCA, Length 570 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-209ENST00000506244 MPOP05164 745 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 POLBP06746 335 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 JMJD7P0C870 316 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 PGAM1P18669 254 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 RBMS1P29558 406 aaKnown RBP16.32■□□□□ 0.2
SNCA-209ENST00000506244 CSF2RBP32927 897 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 CD151P48509 253 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 LIMK2P53671 638 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 CYP4F3Q08477 520 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 GPR18Q14330 331 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 KRT33BQ14525 404 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 PLCL1Q15111 1095 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 TMED2Q15363 201 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 ANKRD20A4Q4UJ75 823 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 NKAIN2Q5VXU1 208 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 CES3Q6UWW8 571 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 USP53Q70EK8 1073 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 RAB11FIP2Q7L804 512 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 TMEM135Q86UB9 458 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 PROSER1Q86XN7 944 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 PLXDC1Q8IUK5 500 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 LMNTD2Q8IXW0 634 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 PDIK1LQ8N165 341 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 BBOF1Q8ND07 529 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 ELMO1Q92556 727 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 STAMBPL1Q96FJ0 436 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 CCDC74BQ96LY2 380 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 RMDN2Q96LZ7 410 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 PANX3Q96QZ0 392 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 TRIM51Q9BSJ1 452 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 TBC1D10AQ9BXI6 508 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 THSD1Q9NS62 852 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 MARCH4Q9P2E8 410 aaPredicted RBP16.32■□□□□ 0.2
SNCA-209ENST00000506244 AKAP13Q12802 2813 aa16.32■□□□□ 0.2
SNCA-209ENST00000506244 PIKFYVEQ9Y2I7 2098 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 MN1Q10571 1320 aaPredicted RBP16.31■□□□□ 0.2
SNCA-209ENST00000506244 IGHV5-10-1A0A0J9YXX1 117 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 FAM187AA6NFU0 413 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 EFCAB8A8MWE9 144 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 H3BMM5 538 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 OR1I1O60431 355 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 SEC31AO94979 1220 aaKnown RBP16.31■□□□□ 0.2
SNCA-209ENST00000506244 TTC4O95801 387 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 THRAP10827 490 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 AMD1P17707 334 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 RPS3P23396 243 aaKnown RBP eCLIP16.31■□□□□ 0.2
SNCA-209ENST00000506244 ARNTP27540 789 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 CAPZBP47756 277 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 ERVPABLB-1P60509 514 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 THOC5Q13769 683 aaKnown RBP16.31■□□□□ 0.2
SNCA-209ENST00000506244 BOP1Q14137 746 aaKnown RBP16.31■□□□□ 0.2
SNCA-209ENST00000506244 SEMA3AQ14563 771 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 LONRF1Q17RB8 773 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 TYSND1Q2T9J0 566 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 TBC1D25Q3MII6 688 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 ZNF658BQ4V348 819 aaPredicted RBP16.31■□□□□ 0.2
SNCA-209ENST00000506244 PTRHD1Q6GMV3 140 aaKnown RBP16.31■□□□□ 0.2
SNCA-209ENST00000506244 CAPRIN2Q6IMN6 1127 aaKnown RBP16.31■□□□□ 0.2
SNCA-209ENST00000506244 MICALCLQ6ZW33 695 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 PDZD3Q86UT5 571 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 FBXO39Q8N4B4 442 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 GPR150Q8NGU9 434 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 CALML6Q8TD86 181 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 NCSTNQ92542 709 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 ZNF578Q96N58 590 aaPredicted RBP16.31■□□□□ 0.2
SNCA-209ENST00000506244 OR52A5Q9H2C5 316 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 SEMA6CQ9H3T2 930 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 LOXL2Q9Y4K0 774 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 PRSS21Q9Y6M0 314 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 ASPMQ8IZT6 3477 aa16.31■□□□□ 0.2
SNCA-209ENST00000506244 MAP1BP46821 2468 aaKnown RBP16.3■□□□□ 0.2
SNCA-209ENST00000506244 UBA6A0AVT1 1052 aaPredicted RBP16.3■□□□□ 0.2
SNCA-209ENST00000506244 KPNA5O15131 536 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 ITGA2BP08514 1039 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 IVDP26440 423 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 CSTF2P33240 577 aaKnown RBP eCLIP16.3■□□□□ 0.2
SNCA-209ENST00000506244 ARCN1P48444 511 aaKnown RBP16.3■□□□□ 0.2
SNCA-209ENST00000506244 HIF1AQ16665 826 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 ZNF470Q6ECI4 717 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 HIBCHQ6NVY1 386 aaPredicted RBP16.3■□□□□ 0.2
SNCA-209ENST00000506244 NEPROQ6NW34 567 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 FOXR1Q6PIV2 292 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 ZNF572Q7Z3I7 529 aaPredicted RBP16.3■□□□□ 0.2
SNCA-209ENST00000506244 TMPRSS9Q7Z410 1059 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 SERBP1Q8NC51 408 aaKnown RBP eCLIP16.3■□□□□ 0.2
SNCA-209ENST00000506244 AGBL5Q8NDL9 886 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 LRRC39Q96DD0 335 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 SIGLEC10Q96LC7 697 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 INSM2Q96T92 566 aaPredicted RBP16.3■□□□□ 0.2
SNCA-209ENST00000506244 FAM167BQ9BTA0 163 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 CARD6Q9BX69 1037 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 KIR3DX1Q9H7L2 352 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 INTS10Q9NVR2 710 aaKnown RBP16.3■□□□□ 0.2
SNCA-209ENST00000506244 ZMIZ1Q9ULJ6 1067 aa16.3■□□□□ 0.2
SNCA-209ENST00000506244 CFAP20Q9Y6A4 193 aaKnown RBP16.3■□□□□ 0.2
SNCA-209ENST00000506244 ESR1P03372 595 aa16.29■□□□□ 0.2
SNCA-209ENST00000506244 CAPNS1P04632 268 aa16.29■□□□□ 0.2
SNCA-209ENST00000506244 APOA4P06727 396 aa16.29■□□□□ 0.2
SNCA-209ENST00000506244 PREPP48147 710 aa16.29■□□□□ 0.2
SNCA-209ENST00000506244 ITGA8P53708 1063 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms