RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 C12orf66Q96MD2 445 aa16.04■□□□□ 0.16
SF3A1-209ENST00000496189 NUDT22Q9BRQ3 303 aa16.04■□□□□ 0.16
SF3A1-209ENST00000496189 WWP1Q9H0M0 922 aa16.04■□□□□ 0.16
SF3A1-209ENST00000496189 SLC40A1Q9NP59 571 aa16.04■□□□□ 0.16
SF3A1-209ENST00000496189 SYBUQ9NX95 663 aa16.04■□□□□ 0.16
SF3A1-209ENST00000496189 SCHIP1Q9P0W5 487 aaPredicted RBP16.04■□□□□ 0.16
SF3A1-209ENST00000496189 ZNF624Q9P2J8 865 aaPredicted RBP16.04■□□□□ 0.16
SF3A1-209ENST00000496189 SOX13Q9UN79 622 aa16.04■□□□□ 0.16
SF3A1-209ENST00000496189 LOXL2Q9Y4K0 774 aa16.04■□□□□ 0.16
SF3A1-209ENST00000496189 AKAP13Q12802 2813 aa16.04■□□□□ 0.16
SF3A1-209ENST00000496189 PRR19A6NJB7 356 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 LIN7AO14910 233 aaPredicted RBP16.03■□□□□ 0.16
SF3A1-209ENST00000496189 CD3EAPO15446 510 aaKnown RBP16.03■□□□□ 0.16
SF3A1-209ENST00000496189 NDUFS3O75489 264 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 DXOO77932 396 aaKnown RBP16.03■□□□□ 0.16
SF3A1-209ENST00000496189 UBXN7O94888 489 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 POLBP06746 335 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 BRAFP15056 766 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 LIMK2P53671 638 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 ZFP36L1Q07352 338 aaKnown RBP16.03■□□□□ 0.16
SF3A1-209ENST00000496189 RPA4Q13156 261 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 CLCA4Q14CN2 919 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 RPE65Q16518 533 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 TMEM164Q5U3C3 297 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 IGF2-ASQ6U949 168 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 SLITRK4Q8IW52 837 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 CLDN19Q8N6F1 224 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 AGBL5Q8NDL9 886 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 GABPB2Q8TAK5 448 aaPredicted RBP16.03■□□□□ 0.16
SF3A1-209ENST00000496189 CCDC97Q96F63 343 aaPredicted RBP16.03■□□□□ 0.16
SF3A1-209ENST00000496189 CCDC74BQ96LY2 380 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 ZNF778Q96MU6 729 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 NAT9Q9BTE0 207 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 SEMA6CQ9H3T2 930 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 WHRNQ9P202 907 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 SNX24Q9Y343 169 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 MAD1L1Q9Y6D9 718 aa16.03■□□□□ 0.16
SF3A1-209ENST00000496189 IGHV5-10-1A0A0J9YXX1 117 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 FAM237BA0A1B0GVD1 139 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 CASC3O15234 703 aaKnown RBP16.02■□□□□ 0.16
SF3A1-209ENST00000496189 TNFSF15O95150 251 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 ITGA2BP08514 1039 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 PRSS56P0CW18 603 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 MTHFD1P11586 935 aaKnown RBP16.02■□□□□ 0.16
SF3A1-209ENST00000496189 MAGEA3P43357 314 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 RPL21P46778 160 aaKnown RBP16.02■□□□□ 0.16
SF3A1-209ENST00000496189 ITGA8P53708 1063 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 ARL4CP56559 192 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 CAV1Q03135 178 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 GPR18Q14330 331 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 DNTTIP2Q5QJE6 756 aaKnown RBP16.02■□□□□ 0.16
SF3A1-209ENST00000496189 SNAP47Q5SQN1 464 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 RNF187Q5TA31 235 aaPredicted RBP16.02■□□□□ 0.16
SF3A1-209ENST00000496189 HIBCHQ6NVY1 386 aaPredicted RBP16.02■□□□□ 0.16
SF3A1-209ENST00000496189 FAM83HQ6ZRV2 1179 aaPredicted RBP16.02■□□□□ 0.16
SF3A1-209ENST00000496189 GSDMBQ8TAX9 411 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 NAT14Q8WUY8 206 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 ZFPM2Q8WW38 1151 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 ELMO1Q92556 727 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 SLC46A1Q96NT5 459 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 DCBLD2Q96PD2 775 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 TBC1D10AQ9BXI6 508 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 COG4Q9H9E3 785 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 TREX1Q9NSU2 369 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 PISDQ9UG56 409 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 VPS9D1Q9Y2B5 631 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 WDR37Q9Y2I8 494 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 RAXQ9Y2V3 346 aa16.02■□□□□ 0.16
SF3A1-209ENST00000496189 BPTFQ12830 3046 aa16.02■□□□□ 0.15
SF3A1-209ENST00000496189 SRRM3A6NNA2 597 aaPredicted RBP16.01■□□□□ 0.15
SF3A1-209ENST00000496189 KDM1AO60341 852 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 VAPBO95292 243 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 NMBRP28336 390 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 CD151P48509 253 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 BOP1Q14137 746 aaKnown RBP16.01■□□□□ 0.15
SF3A1-209ENST00000496189 TMED2Q15363 201 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 HIF1AQ16665 826 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 PTRHD1Q6GMV3 140 aaKnown RBP16.01■□□□□ 0.15
SF3A1-209ENST00000496189 KIAA0930Q6ICG6 404 aaPredicted RBP16.01■□□□□ 0.15
SF3A1-209ENST00000496189 ARMC6Q6NXE6 501 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 LRRC6Q86X45 466 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 MMGT1Q8N4V1 131 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 ZNF248Q8NDW4 579 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 STAMBPL1Q96FJ0 436 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 ZDHHC12Q96GR4 267 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 PANX3Q96QZ0 392 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 DPH5Q9H2P9 285 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 GNPTGQ9UJJ9 305 aa16.01■□□□□ 0.15
SF3A1-209ENST00000496189 UNC13CQ8NB66 2214 aa16■□□□□ 0.15
SF3A1-209ENST00000496189 UBA6A0AVT1 1052 aaPredicted RBP16■□□□□ 0.15
SF3A1-209ENST00000496189 AGRPO00253 132 aa16■□□□□ 0.15
SF3A1-209ENST00000496189 PRMT5O14744 637 aaPredicted RBP16■□□□□ 0.15
SF3A1-209ENST00000496189 SGTAO43765 313 aa16■□□□□ 0.15
SF3A1-209ENST00000496189 ZNF500O60304 480 aaPredicted RBP16■□□□□ 0.15
SF3A1-209ENST00000496189 TTC4O95801 387 aa16■□□□□ 0.15
SF3A1-209ENST00000496189 CAPNS1P04632 268 aa16■□□□□ 0.15
SF3A1-209ENST00000496189 THRAP10827 490 aa16■□□□□ 0.15
SF3A1-209ENST00000496189 TYRP1P17643 537 aa16■□□□□ 0.15
SF3A1-209ENST00000496189 CSF2RBP32927 897 aa16■□□□□ 0.15
SF3A1-209ENST00000496189 CAPZBP47756 277 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms