RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 TBL1XO60907 577 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 TRIM16O95361 564 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 S100BP04271 92 aaPredicted RBP17.67■□□□□ 0.42
VIM-206ENST00000487938 C7P10643 843 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 CDH1P12830 882 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 RHOAP61586 193 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 GPNMBQ14956 572 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 SGO1Q5FBB7 561 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 GPR107Q5VW38 600 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 GPR180Q86V85 440 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 SERPINA9Q86WD7 417 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 ITFG1Q8TB96 612 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 C2orf15Q8WU43 125 aaKnown RBP17.67■□□□□ 0.42
VIM-206ENST00000487938 C17orf80Q9BSJ5 609 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 APOL5Q9BWW9 433 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 TM6SF2Q9BZW4 377 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 RETREG1Q9H6L5 497 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 POLR1BQ9H9Y6 1135 aa17.67■□□□□ 0.42
VIM-206ENST00000487938 FARSBQ9NSD9 589 aaKnown RBP17.67■□□□□ 0.42
VIM-206ENST00000487938 A8MX80 341 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 H0Y858 1186 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 B4GAT1O43505 415 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 DFNA5O60443 496 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 HMGA1P17096 107 aaKnown RBP17.66■□□□□ 0.42
VIM-206ENST00000487938 GGT5P36269 586 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 ADARP55265 1226 aaKnown RBP17.66■□□□□ 0.42
VIM-206ENST00000487938 RPL38P63173 70 aaKnown RBP17.66■□□□□ 0.42
VIM-206ENST00000487938 ADARB1P78563 741 aaKnown RBP17.66■□□□□ 0.42
VIM-206ENST00000487938 TRAF3Q13114 568 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 PWP1Q13610 501 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 PTGR1Q14914 329 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 TCTN1Q2MV58 587 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 KCTD8Q6ZWB6 473 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 STK40Q8N2I9 435 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 DRAXINQ8NBI3 349 aaPredicted RBP17.66■□□□□ 0.42
VIM-206ENST00000487938 MUS81Q96NY9 551 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 C8orf4Q9NR00 106 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 TLR9Q9NR96 1032 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 GALNT8Q9NY28 637 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 VAPAQ9P0L0 249 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 ZNF639Q9UID6 485 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 MAGEL2Q9UJ55 1249 aa17.66■□□□□ 0.42
VIM-206ENST00000487938 TNPO3Q9Y5L0 923 aaKnown RBP17.66■□□□□ 0.42
VIM-206ENST00000487938 ATE1O95260 518 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 TCF3P15923 654 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 UGT1A1P22309 533 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 UGT1A4P22310 534 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 ELK4P28324 431 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 UGT1A3P35503 534 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 UGT1A5P35504 534 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 RAB39AQ14964 217 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 NEDD8Q15843 81 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 FXNQ16595 210 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 ADAMTSL2Q86TH1 951 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 ITIH5Q86UX2 942 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 FAM86B1Q8N7N1 296 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 FIG4Q92562 907 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 TMBIM1Q969X1 311 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 PDLIM5Q96HC4 596 aaKnown RBP17.65■□□□□ 0.42
VIM-206ENST00000487938 EGFL8Q99944 293 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 CLPBQ9H078 707 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 PKD2L2Q9NZM6 624 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 TRPM5Q9NZQ8 1165 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 PCDHGA11Q9Y5H2 935 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 A0A0J9YVX5 310 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 UPK1AO00322 258 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 ARNTLO00327 626 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 RAD51BO15315 384 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 SLC25A14O95258 325 aaPredicted RBP17.65■□□□□ 0.42
VIM-206ENST00000487938 PRAMEF1O95521 474 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 ALBP02768 609 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 COL6A1P12109 1028 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 HMGCLP35914 325 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 HMGCS1Q01581 520 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 ELAVL2Q12926 359 aaKnown RBP17.65■□□□□ 0.42
VIM-206ENST00000487938 PLD1Q13393 1074 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 USP51Q70EK9 711 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 STK32CQ86UX6 486 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 ZNF583Q96ND8 569 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 FEM1AQ9BSK4 669 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 THUMPD3Q9BV44 507 aaKnown RBP17.65■□□□□ 0.42
VIM-206ENST00000487938 NAA50Q9GZZ1 169 aaKnown RBP17.65■□□□□ 0.42
VIM-206ENST00000487938 CWH43Q9H720 699 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 ASB8Q9H765 288 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 ELAC1Q9H777 363 aaKnown RBP17.65■□□□□ 0.42
VIM-206ENST00000487938 CARS2Q9HA77 564 aaKnown RBP17.65■□□□□ 0.42
VIM-206ENST00000487938 ZFP14Q9HCL3 533 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 STARD7Q9NQZ5 370 aa17.65■□□□□ 0.42
VIM-206ENST00000487938 FZD6O60353 706 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 OTCP00480 354 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 ANXA6P08133 673 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 GKP32189 559 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 POLR2IP36954 125 aaKnown RBP17.64■□□□□ 0.41
VIM-206ENST00000487938 TUFMP49411 452 aaKnown RBP17.64■□□□□ 0.41
VIM-206ENST00000487938 IST1P53990 364 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 SP3Q02447 781 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 PAF1Q8N7H5 531 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 PDZD8Q8NEN9 1154 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 OR10A6Q8NH74 314 aa17.64■□□□□ 0.41
VIM-206ENST00000487938 FBXO30Q8TB52 745 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms