RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 DSC1Q08554 894 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 TBL3Q12788 808 aaKnown RBP4.71□□□□□ -1.66
VPS50-214ENST00000477935 SRSF5Q13243 272 aaKnown RBP4.71□□□□□ -1.66
VPS50-214ENST00000477935 CDC37Q16543 378 aaPredicted RBP4.71□□□□□ -1.66
VPS50-214ENST00000477935 CCNI2Q6ZMN8 369 aaPredicted RBP4.71□□□□□ -1.66
VPS50-214ENST00000477935 MON1BQ7L1V2 547 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 ECHDC2Q86YB7 292 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 SMC5Q8IY18 1101 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 CLEC18CQ8NCF0 446 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 DEFB124Q8NES8 71 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 RAB40AQ8WXH6 277 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 MED30Q96HR3 178 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 BOLA2Q9H3K6 86 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 AZI2Q9H6S1 392 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 WDR26Q9H7D7 661 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 MVB12BQ9H7P6 319 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 HEBP1Q9NRV9 189 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP4.71□□□□□ -1.66
VPS50-214ENST00000477935 GDE1Q9NZC3 331 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 IL36RNQ9UBH0 155 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 GINS2Q9Y248 185 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 LRP12Q9Y561 859 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 MIA3Q5JRA6 1907 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 DENND4AQ7Z401 1863 aa4.71□□□□□ -1.66
VPS50-214ENST00000477935 KIAA1671Q9BY89 1806 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 LNP1A1A4G5 178 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 BCLAF3A2AJT9 711 aaKnown RBP4.7□□□□□ -1.66
VPS50-214ENST00000477935 CDX4O14627 284 aaPredicted RBP4.7□□□□□ -1.66
VPS50-214ENST00000477935 TEX28O15482 410 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 ASAP2O43150 1006 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 GPAA1O43292 621 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 ZFYP08048 801 aaPredicted RBP4.7□□□□□ -1.66
VPS50-214ENST00000477935 POLR2MP0CAP2 368 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 NAGAP17050 411 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 MARK3P27448 753 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 KLHL22Q53GT1 634 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 CLLU1OSQ5K130 101 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 C8orf82Q6P1X6 216 aaPredicted RBP4.7□□□□□ -1.66
VPS50-214ENST00000477935 BBS12Q6ZW61 710 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 PLPPR4Q7Z2D5 763 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 PATL1Q86TB9 770 aaKnown RBP4.7□□□□□ -1.66
VPS50-214ENST00000477935 KBTBD6Q86V97 674 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 CHCHD4Q8N4Q1 142 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 ZMIZ2Q8NF64 920 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 GPT2Q8TD30 523 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 ELSPBP1Q96BH3 223 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 WBP1Q96G27 269 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 SCLT1Q96NL6 688 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 CD180Q99467 661 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 TMEM175Q9BSA9 504 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 TRMT61BQ9BVS5 477 aaKnown RBP4.7□□□□□ -1.66
VPS50-214ENST00000477935 NAPBQ9H115 298 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 RIC8AQ9NPQ8 531 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 ALKBH4Q9NXW9 302 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 DDX52Q9Y2R4 599 aaKnown RBP eCLIP4.7□□□□□ -1.66
VPS50-214ENST00000477935 LAMA1P25391 3075 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 KIAA1217Q5T5P2 1943 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 BAZ2AQ9UIF9 1905 aaKnown RBP4.7□□□□□ -1.66
VPS50-214ENST00000477935 MYH4Q9Y623 1939 aa4.7□□□□□ -1.66
VPS50-214ENST00000477935 PATJQ8NI35 1801 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 UBR5O95071 2799 aaPredicted RBP4.69□□□□□ -1.66
VPS50-214ENST00000477935 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP4.69□□□□□ -1.66
VPS50-214ENST00000477935 GSTTP1A0A1W2PQM5 241 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 KDM4EB2RXH2 506 aaPredicted RBP4.69□□□□□ -1.66
VPS50-214ENST00000477935 EIF3FO00303 357 aaPredicted RBP4.69□□□□□ -1.66
VPS50-214ENST00000477935 RNF113AO15541 343 aaKnown RBP4.69□□□□□ -1.66
VPS50-214ENST00000477935 ITM2AO43736 263 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 SLC25A17O43808 307 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 NMT2O60551 498 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 CTPS1P17812 591 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 HOXA9P31269 272 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 AMTP48728 403 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 GLUD2P49448 558 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 CENPAP49450 140 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 NT5C2P49902 561 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 NUDT6P53370 316 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 SP4Q02446 784 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 CREB5Q02930 508 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 MYBPC2Q14324 1141 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 KARSQ15046 597 aaKnown RBP4.69□□□□□ -1.66
VPS50-214ENST00000477935 PLCB4Q15147 1175 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 SHBQ15464 509 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 TDRD12Q587J7 1177 aaKnown RBP4.69□□□□□ -1.66
VPS50-214ENST00000477935 WDR45BQ5MNZ6 344 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 TCEAL6Q6IPX3 200 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 IL20RBQ6UXL0 311 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 PRSS45Q7RTY3 260 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 FAM228AQ86W67 206 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 TMEM173Q86WV6 379 aaPredicted RBP4.69□□□□□ -1.66
VPS50-214ENST00000477935 CPOQ8IVL8 374 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 NEXN-AS1Q8NBZ9 246 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 MCPH1Q8NEM0 835 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 SPATA18Q8TC71 538 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 TMEM170AQ8WVE7 144 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 CNOT9Q92600 299 aaKnown RBP4.69□□□□□ -1.66
VPS50-214ENST00000477935 TCEAL3Q969E4 200 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 KIF1BPQ96EK5 621 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 KXD1Q9BQD3 176 aa4.69□□□□□ -1.66
VPS50-214ENST00000477935 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP4.69□□□□□ -1.66
VPS50-214ENST00000477935 MSTO1Q9BUK6 570 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms