RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 COG4Q9H9E3 785 aa13.91□□□□□ -0.18
VAMP4-203ENST00000474047 ASCL3Q9NQ33 180 aa13.91□□□□□ -0.18
VAMP4-203ENST00000474047 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.91□□□□□ -0.18
VAMP4-203ENST00000474047 EPG5Q9HCE0 2579 aa13.91□□□□□ -0.18
VAMP4-203ENST00000474047 PRAMEF33A0A0G2JMD5 474 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 MAGEB16A2A368 324 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 PFDN6O15212 129 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 NDUFS3O75489 264 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 VAPBO95292 243 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 THRAP10827 490 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 ITIH1P19827 911 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 CASQ1P31415 396 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 EIF2S3P41091 472 aaKnown RBP13.9□□□□□ -0.18
VAMP4-203ENST00000474047 BRD3Q15059 726 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 SYTL3Q4VX76 610 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 C19orf48Q6RUI8 117 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 CES3Q6UWW8 571 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 SDCCAG8Q86SQ7 713 aaPredicted RBP13.9□□□□□ -0.18
VAMP4-203ENST00000474047 FAM129CQ86XR2 697 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 PPIL6Q8IXY8 311 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 LILRA3Q8N6C8 439 aaPredicted RBP13.9□□□□□ -0.18
VAMP4-203ENST00000474047 MCUQ8NE86 351 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 SPDYE1Q8NFV5 336 aaPredicted RBP13.9□□□□□ -0.18
VAMP4-203ENST00000474047 PRR11Q96HE9 360 aaPredicted RBP13.9□□□□□ -0.18
VAMP4-203ENST00000474047 SGSM3Q96HU1 749 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 TGM7Q96PF1 710 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 FERD3LQ96RJ6 166 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 KIFC1Q9BW19 673 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 MRM3Q9HC36 420 aaKnown RBP13.9□□□□□ -0.18
VAMP4-203ENST00000474047 RNF14Q9UBS8 474 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 SOX13Q9UN79 622 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 PRSS21Q9Y6M0 314 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 APC2O95996 2303 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 OR1I1O60431 355 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 RASSF9O75901 435 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 MLNP12872 115 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 SLC5A2P31639 672 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 RPA4Q13156 261 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 MRNIPQ6NTE8 343 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 ARMC6Q6NXE6 501 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 IRGCQ6NXR0 463 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 ZNF534Q76KX8 674 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 PCGF5Q86SE9 256 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 CREG2Q8IUH2 290 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 GPR150Q8NGU9 434 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 KCNE4Q8WWG9 221 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 JPH3Q8WXH2 748 aaPredicted RBP13.9□□□□□ -0.18
VAMP4-203ENST00000474047 USP7Q93009 1102 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 MFSD3Q96ES6 412 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 ZDHHC12Q96GR4 267 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 TREX1Q9NSU2 369 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 PCYOX1Q9UHG3 505 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 NEU2Q9Y3R4 380 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 MAD1L1Q9Y6D9 718 aa13.9□□□□□ -0.18
VAMP4-203ENST00000474047 CDRT15L2A8MXV6 281 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 LIN7AO14910 233 aaPredicted RBP13.89□□□□□ -0.19
VAMP4-203ENST00000474047 CAPN5O15484 640 aaPredicted RBP13.89□□□□□ -0.19
VAMP4-203ENST00000474047 TMEM63AO94886 807 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 ITGB6P18564 788 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 NDUFS1P28331 727 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 ABCG1P45844 678 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 PREPP48147 710 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 PTK6Q13882 451 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 BOP1Q14137 746 aaKnown RBP13.89□□□□□ -0.19
VAMP4-203ENST00000474047 BROXQ5VW32 411 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 ARMC3Q5W041 872 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 PTRHD1Q6GMV3 140 aaKnown RBP13.89□□□□□ -0.19
VAMP4-203ENST00000474047 DUS1LQ6P1R4 473 aaKnown RBP13.89□□□□□ -0.19
VAMP4-203ENST00000474047 LDB1Q86U70 411 aaPredicted RBP13.89□□□□□ -0.19
VAMP4-203ENST00000474047 CAND1Q86VP6 1230 aaKnown RBP13.89□□□□□ -0.19
VAMP4-203ENST00000474047 C17orf53Q8N3J3 647 aaPredicted RBP13.89□□□□□ -0.19
VAMP4-203ENST00000474047 ZFPM2Q8WW38 1151 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 RMDN2Q96LZ7 410 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 SERPINB12Q96P63 405 aa13.89□□□□□ -0.19
VAMP4-203ENST00000474047 PIKFYVEQ9Y2I7 2098 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 A0A087WV48 116 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 UBA6A0AVT1 1052 aaPredicted RBP13.88□□□□□ -0.19
VAMP4-203ENST00000474047 EFCAB7A8K855 629 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 CCDC188H7C350 402 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 CCL4P13236 92 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 CAPZBP47756 277 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 CD151P48509 253 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 CSE1LP55060 971 aaKnown RBP13.88□□□□□ -0.19
VAMP4-203ENST00000474047 DR1Q01658 176 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 DHX34Q14147 1143 aaKnown RBP13.88□□□□□ -0.19
VAMP4-203ENST00000474047 CAPRIN2Q6IMN6 1127 aaKnown RBP13.88□□□□□ -0.19
VAMP4-203ENST00000474047 SYDE1Q6ZW31 735 aaPredicted RBP13.88□□□□□ -0.19
VAMP4-203ENST00000474047 CLEC14AQ86T13 490 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 MPP5Q8N3R9 675 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 GSDMBQ8TAX9 411 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 ZNF669Q96BR6 464 aaPredicted RBP13.88□□□□□ -0.19
VAMP4-203ENST00000474047 TAAR9Q96RI9 348 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 SLC39A1Q9NY26 324 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 OGFRQ9NZT2 677 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 MARCH4Q9P2E8 410 aaPredicted RBP13.88□□□□□ -0.19
VAMP4-203ENST00000474047 PDP2Q9P2J9 529 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 PCDHGA7Q9Y5G6 932 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 USP24Q9UPU5 2620 aa13.88□□□□□ -0.19
VAMP4-203ENST00000474047 PRMT5O14744 637 aaPredicted RBP13.87□□□□□ -0.19
VAMP4-203ENST00000474047 NVLO15381 856 aaKnown RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms