RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 SLC27A6Q9Y2P4 619 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 AAR2Q9Y312 384 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PCDHGA9Q9Y5G4 932 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PCDHGA8Q9Y5G5 932 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PCDHGA7Q9Y5G6 932 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PCDHGA6Q9Y5G7 932 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PCDHGA3Q9Y5H0 932 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PCDHGA2Q9Y5H1 932 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 RAI2Q9Y5P3 530 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 MAD1L1Q9Y6D9 718 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CHD9Q3L8U1 2897 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 A0A0U1RQS6 177 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 SDR42E2A6NKP2 422 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 K7EQS6 105 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 PLK4O00444 970 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 NDC80O14777 642 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 BUD23O43709 281 aaKnown RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 PRICKLE3O43900 615 aaPredicted RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 SYNCRIPO60506 623 aaKnown RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 PRAMEF4O60810 478 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 ZNF821O75541 412 aaPredicted RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 SNUPNO95149 360 aaKnown RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 KLF8O95600 359 aaPredicted RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 POP4O95707 220 aaKnown RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 AP2A1O95782 977 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 IL1BP01584 269 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 SLC4A1P02730 911 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 UGT2B4P06133 528 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 TUBBP07437 444 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 SRPRAP08240 638 aaKnown RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 MMP2P08253 660 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 PDHA1P08559 390 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 PIRTP0C851 137 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 TPSB2P20231 275 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 HOXA5P20719 270 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 CCND1P24385 295 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 PRKCHP24723 683 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 HSPA9P38646 679 aaKnown RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 ELK3P41970 407 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 HELZP42694 1942 aaKnown RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 IL12RB1P42701 662 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 MAGEA4P43358 317 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 TNFRSF4P43489 277 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 NPY2RP49146 381 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 CCNHP51946 323 aaPredicted RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 PMS2P54278 862 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 FAM193AP78312 1265 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 ADAM8P78325 824 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 CRADDP78560 199 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 CDK18Q07002 472 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 NSUN2Q08J23 767 aaKnown RBP eCLIP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 TRAF2Q12933 501 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 ZNF234Q14588 700 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 IHHQ14623 411 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 KCNJ11Q14654 390 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 POU6F1Q14863 301 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 UBXN2BQ14CS0 331 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 MORF4L2Q15014 288 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 PTPRRQ15256 657 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 TPSAB1Q15661 275 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 MLF2Q15773 248 aaPredicted RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 KYNUQ16719 465 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 MAP9Q49MG5 647 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 CCDC38Q502W7 563 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 DNAJC21Q5F1R6 531 aaKnown RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 LRRC73Q5JTD7 316 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 CERCAMQ5T4B2 595 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 ARMC12Q5T9G4 340 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 WDR93Q6P2C0 686 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 C22orf39Q6P5X5 142 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 LRRC8BQ6P9F7 803 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 KDELC1Q6UW63 502 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 SERPINA13PQ6UXR4 307 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 ZNF852Q6ZMS4 543 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 DPY19L3Q6ZPD9 716 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 CENPUQ71F23 418 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 LINC00523Q86TU6 105 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 CAND1Q86VP6 1230 aaKnown RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 HOOK3Q86VS8 718 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 RALGPS2Q86X27 583 aaPredicted RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 CACUL1Q86Y37 369 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 ZBED8Q8IZ13 594 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 CHPFQ8IZ52 775 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 PDIK1LQ8N165 341 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 MPP5Q8N3R9 675 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 PCDH20Q8N6Y1 951 aaKnown RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 ANKRD53Q8N9V6 530 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 FBXO36Q8NEA4 188 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 OR2AP1Q8NGE2 309 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 BLOC1S5Q8TDH9 187 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 NUP210Q8TEM1 1887 aaPredicted RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 GANCQ8TET4 914 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 SHROOM3Q8TF72 1996 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 PYROXD1Q8WU10 500 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 DNASE1L2Q92874 299 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 IMP4Q96G21 291 aaKnown RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 ZNF419Q96HQ0 510 aaPredicted RBP4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 C9orf72Q96LT7 481 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 NSMCE3Q96MG7 304 aa4.08□□□□□ -1.76
TMEM39A-204ENST00000468545 KLHL32Q96NJ5 620 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms