RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CXCR2P25025 360 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 HOXA7P31268 230 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 MCAMP43121 646 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 MAGEA1P43355 309 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 AP2S1P53680 142 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 CDH4P55283 916 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 RPS3AP61247 264 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 SKP1P63208 163 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 NKX6-1P78426 367 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 MAT1AQ00266 395 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 UBE3AQ05086 875 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 CXCL9Q07325 125 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 MAP3K12Q12852 859 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 MVPQ14764 893 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 NKPD1Q17RQ9 610 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 ZNF829Q3KNS6 432 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 TTC38Q5R3I4 469 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 ATXN7L2Q5T6C5 722 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 JADE1Q6IE81 842 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 C5orf46Q6UWT4 87 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 CYP2R1Q6VVX0 501 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 MIGA2Q7L4E1 593 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 TAS2R42Q7RTR8 314 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM122BQ7Z309 247 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 HEATR3Q7Z4Q2 680 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 RASAL3Q86YV0 1011 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 SIAH1Q8IUQ4 282 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 CCDC105Q8IYK2 499 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 TMEM130Q8N3G9 435 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 ZCCHC7Q8N3Z6 543 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 SRBD1Q8N5C6 995 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 DNAJA4Q8WW22 397 aaPredicted RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 BRI3BPQ8WY22 251 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 RFFLQ8WZ73 363 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 FBXO32Q969P5 355 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 TAMM41Q96BW9 452 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 PHF21BQ96EK2 531 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 CYFIP2Q96F07 1278 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 C1QTNF3Q9BXJ4 246 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 MTG2Q9H4K7 406 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 COQ10BQ9H8M1 238 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 MCCC2Q9HCC0 563 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 TIGARQ9NQ88 270 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 SACM1LQ9NTJ5 587 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 KLHL14Q9P2G3 628 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 POLLQ9UGP5 575 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 KCND3Q9UK17 655 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 CLCA2Q9UQC9 943 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 PCDHA1Q9Y5I3 950 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 TRIOBPQ9H2D6 2365 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 KIAA0100Q14667 2235 aaKnown RBP4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 KDM3AQ9Y4C1 1321 aa4.75□□□□□ -1.65
CCDC88A-209ENST00000456975 A0A1W2PRG0 241 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 AGAP14A8MT82 685 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SCAMP2O15127 329 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SLC16A6O15403 523 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 TBC1D4O60343 1298 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 PPP6R2O75170 966 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CDH16O75309 829 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 RAD17O75943 681 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 NDST3O95803 873 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 LGI1O95970 557 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 PNPP00491 289 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 GNAI2P04899 355 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 FDPSP14324 419 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 IL1R1P14778 569 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 FGFR2P21802 821 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 TUBG1P23258 451 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 THBS2P35442 1172 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 HSPA9P38646 679 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 AFMP43652 599 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 CCR4P51679 360 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ARSEP51690 589 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 HK3P52790 923 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ACTR3P61158 418 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ARF3P61204 181 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 NAA20P61599 178 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 SNRPNP63162 240 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ARF1P84077 181 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ATP2C1P98194 919 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 TNFRSF17Q02223 184 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 PPATQ06203 517 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 RAD51Q06609 339 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM110CQ1W6H9 321 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 TIGD2Q4W5G0 525 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 GLE1Q53GS7 698 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 BMP2KLQ5H9B9 411 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 RALGPS1Q5JS13 557 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 FAM69AQ5T7M9 428 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 MLIPQ5VWP3 458 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 NFRKBQ6P4R8 1299 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 GALNT18Q6P9A2 607 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 DPP8Q6V1X1 898 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 EFL1Q7Z2Z2 1120 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 DCP2Q8IU60 420 aaKnown RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ARID3BQ8IVW6 561 aaPredicted RBP4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 MCOLN2Q8IZK6 566 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 ARMC10Q8N2F6 343 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 LNX2Q8N448 690 aa4.74□□□□□ -1.65
CCDC88A-209ENST00000456975 OR8K5Q8NH50 307 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms