RNA–Protein interactions for RNA: ENST00000393368.2

HMGB3P1-201, Transcript of high mobility group box 3 pseudogene 1, humanhuman

BASIC

Gene HMGB3P1, Length 573 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P1-201ENST00000393368 LINC00615Q96LM1 132 aaPredicted RBP7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 SLC46A1Q96NT5 459 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 FCRL3Q96P31 734 aaPredicted RBP7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 TGM7Q96PF1 710 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 C19orf43Q9BQ61 176 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 CCM2Q9BSQ5 444 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 IL22Q9GZX6 179 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 SLC40A1Q9NP59 571 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 WASH6PQ9NQA3 447 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 CATSPERZQ9NTU4 200 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 POT1Q9NUX5 634 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 OCIAD1Q9NX40 245 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 BFARQ9NZS9 450 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 FOXJ2Q9P0K8 574 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 DKK4Q9UBT3 224 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 ASIC3Q9UHC3 531 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 RIMKLBQ9ULI2 386 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 SOX13Q9UN79 622 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 DNMT3AQ9Y6K1 912 aaPredicted RBP7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 ASXL3Q9C0F0 2248 aa7.5□□□□□ -1.21
HMGB3P1-201ENST00000393368 DSPP15924 2871 aaKnown RBP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 LILRA5A6NI73 299 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 EFCAB7A8K855 629 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 C9orf172C9J069 976 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 CD3EAPO15446 510 aaKnown RBP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 TTI1O43156 1089 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 ZW10O43264 779 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 KIF1CO43896 1103 aaKnown RBP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 PRAMEF10O60809 474 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 AMD1P17707 334 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 SLC5A2P31639 672 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 NSG1P42857 185 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 CAPZBP47756 277 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 SEPHS1P49903 392 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 EPHA4P54764 986 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 DR1Q01658 176 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 C2orf54Q08AI8 447 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 SRSF6Q13247 344 aaKnown RBP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 LAMB3Q13751 1172 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 PTK6Q13882 451 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 ITIH4Q14624 930 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 COL28A1Q2UY09 1125 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 MSS51Q4VC12 460 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 ZNF789Q5FWF6 425 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 HP1BP3Q5SSJ5 553 aaPredicted RBP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 RNASEH2BQ5TBB1 312 aaKnown RBP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 IZUMO3Q5VZ72 239 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 CAPRIN2Q6IMN6 1127 aaKnown RBP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 IRGCQ6NXR0 463 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 PACS1Q6VY07 963 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 FAM92BQ6ZTR7 304 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 NLRP9Q7RTR0 991 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 FAM129CQ86XR2 697 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 VRK3Q8IV63 474 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 UNC5BQ8IZJ1 945 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 PHC3Q8NDX5 983 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 OR4D9Q8NGE8 314 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 SNIP1Q8TAD8 396 aaKnown RBP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 HEXDCQ8WVB3 486 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 ELMO1Q92556 727 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 USP7Q93009 1102 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 TBRG4Q969Z0 631 aaKnown RBP eCLIP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 SH3KBP1Q96B97 665 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 ZNF669Q96BR6 464 aaPredicted RBP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 HS3ST6Q96QI5 342 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 KRT12Q99456 494 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 CMKLR1Q99788 373 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 CTRCQ99895 268 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 HGH1Q9BTY7 390 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 KIFC1Q9BW19 673 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 TRIM31Q9BZY9 425 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 OR52A5Q9H2C5 316 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 THSD1Q9NS62 852 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 CIDEBQ9UHD4 219 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 TSR3Q9UJK0 312 aaKnown RBP7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 ACSL5Q9ULC5 683 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 PCDHGA8Q9Y5G5 932 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 MAD1L1Q9Y6D9 718 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 NBEAQ8NFP9 2946 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 RP1P56715 2156 aa7.49□□□□□ -1.21
HMGB3P1-201ENST00000393368 TPRP12270 2363 aaKnown RBP7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 UBA6A0AVT1 1052 aaPredicted RBP7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 CDRT15L2A8MXV6 281 aa7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 TMX2-CTNND1H3BSU7 103 aa7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 DNALI1O14645 258 aaPredicted RBP7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 CAPN5O15484 640 aaPredicted RBP7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 KCNJ13O60928 360 aa7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 RASSF9O75901 435 aa7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 DXOO77932 396 aaKnown RBP7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 AP2A2O94973 939 aa7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 ITGA2BP08514 1039 aa7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 OR56A5P0C7T3 313 aa7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 FGF3P11487 239 aaPredicted RBP7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 IVDP26440 423 aa7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 CASQ1P31415 396 aa7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 CSTF2P33240 577 aaKnown RBP eCLIP7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 MAGEA3P43357 314 aa7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 EIF3BP55884 814 aaKnown RBP7.48□□□□□ -1.21
HMGB3P1-201ENST00000393368 PCBP4P57723 403 aaKnown RBP7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms