RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 B3GALT6Q96L58 329 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 TRIB3Q96RU7 358 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 ZBED2Q9BTP6 218 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 TBCDQ9BTW9 1192 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 TRMT6Q9UJA5 497 aaKnown RBP16.15■□□□□ 0.18
SDC4-201ENST00000372733 SNX5Q9Y5X3 404 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 SLC1A7O00341 560 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 GNGT2O14610 69 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 ANKRD28O15084 1053 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 HS6ST1O60243 411 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 MGEA5O60502 916 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 ALDH2P05091 517 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 SERPINF2P08697 491 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 ZNF865P0CJ78 1059 aaPredicted RBP16.15■□□□□ 0.18
SDC4-201ENST00000372733 ALDH4A1P30038 563 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 OR1E1P30953 314 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 EIF2B2P49770 351 aaKnown RBP16.15■□□□□ 0.18
SDC4-201ENST00000372733 GABARAPL2P60520 117 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 ILF2Q12905 390 aaKnown RBP16.15■□□□□ 0.18
SDC4-201ENST00000372733 OXA1LQ15070 435 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 CTF1Q16619 201 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 LDLRAD1Q5T700 205 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 PSAPL1Q6NUJ1 521 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 GLT6D1Q7Z4J2 308 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 TMEM179BQ7Z7N9 219 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 PJA1Q8NG27 643 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 MS4A4AQ96JQ5 239 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 FEM1AQ9BSK4 669 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 ACTR8Q9H981 624 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 ADGRE2Q9UHX3 823 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 TRIM17Q9Y577 477 aa16.15■□□□□ 0.18
SDC4-201ENST00000372733 GRXCR2A6NFK2 248 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 KPNA4O00629 521 aaPredicted RBP16.14■□□□□ 0.17
SDC4-201ENST00000372733 LSM1O15116 133 aaKnown RBP16.14■□□□□ 0.17
SDC4-201ENST00000372733 PRAMEF11O60813 436 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 VPS26AO75436 327 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 KATNA1O75449 491 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 HOXC8P31273 242 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 OCA2Q04671 838 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 TRIM32Q13049 653 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 ZNF846Q147U1 533 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 CTSL3PQ5NE16 218 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 MON1AQ86VX9 555 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 ZNF548Q8NEK5 533 aaPredicted RBP16.14■□□□□ 0.17
SDC4-201ENST00000372733 CD200R1Q8TD46 325 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 RDH12Q96NR8 316 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 UGT2B28Q9BY64 529 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 NIPSNAP3AQ9UFN0 247 aaPredicted RBP16.14■□□□□ 0.17
SDC4-201ENST00000372733 GBF1Q92538 1859 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 ARNTLO00327 626 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 XPNPEP2O43895 674 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 CHRNA1P02708 482 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 GRK4P32298 578 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 RGRP47804 291 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 RPS3AP61247 264 aaKnown RBP16.14■□□□□ 0.17
SDC4-201ENST00000372733 PTGR1Q14914 329 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 AP5B1Q2VPB7 878 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 PARP15Q460N3 678 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 RFTN2Q52LD8 501 aaPredicted RBP16.14■□□□□ 0.17
SDC4-201ENST00000372733 NECAB2Q7Z6G3 386 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 MDGA1Q8NFP4 955 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 ZFP90Q8TF47 636 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 FRS2Q8WU20 508 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 RMDN1Q96DB5 314 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 ITCHQ96J02 903 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 CCDC115Q96NT0 180 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 NODALQ96S42 347 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 THUMPD3Q9BV44 507 aaKnown RBP16.14■□□□□ 0.17
SDC4-201ENST00000372733 PCDH12Q9NPG4 1184 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 AKIP1Q9NQ31 210 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 MTRRQ9UBK8 725 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 SCML2Q9UQR0 700 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 INVSQ9Y283 1065 aa16.14■□□□□ 0.17
SDC4-201ENST00000372733 GPR39O43194 453 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 PRKD3O94806 890 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 EPOP01588 193 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 PKMP14618 531 aaKnown RBP16.13■□□□□ 0.17
SDC4-201ENST00000372733 PCMT1P22061 227 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 KPNA1P52294 538 aaPredicted RBP16.13■□□□□ 0.17
SDC4-201ENST00000372733 CCL14Q16627 93 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 SLCO6A1Q86UG4 719 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 ATP6V0D2Q8N8Y2 350 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 OR8J3Q8NGG0 315 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 CNIH3Q8TBE1 160 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 MROQ9BYG7 248 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 ZNF408Q9H9D4 720 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 U3KQV3 271 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 A0A0D9SEW6 157 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 A0A0U1RQS6 177 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 IQCF5A8MTL0 148 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 ITIH1P19827 911 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 IL2P60568 153 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 LSM3P62310 102 aaKnown RBP16.13■□□□□ 0.17
SDC4-201ENST00000372733 RPL38P63173 70 aaKnown RBP16.13■□□□□ 0.17
SDC4-201ENST00000372733 IFITM3Q01628 133 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 CYP4F3Q08477 520 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 BTG3Q14201 252 aaPredicted RBP16.13■□□□□ 0.17
SDC4-201ENST00000372733 ABRAXAS2Q15018 415 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 PTPRRQ15256 657 aa16.13■□□□□ 0.17
SDC4-201ENST00000372733 CFAP52Q8N1V2 620 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms