RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 ARSFP54793 590 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 GRSF1Q12849 480 aaKnown RBP eCLIP14.06□□□□□ -0.16
CD48-201ENST00000368045 CBX2Q14781 532 aaPredicted RBP14.06□□□□□ -0.16
CD48-201ENST00000368045 KIAA0040Q15053 153 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 ZNF773Q6PK81 442 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 LRRC8DQ7L1W4 858 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 LYSMD3Q7Z3D4 306 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 RBFAQ8N0V3 343 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 FBXO22Q8NEZ5 403 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 ESAMQ96AP7 390 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 PPM1MQ96MI6 270 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 CDK15Q96Q40 435 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 IPPKQ9H8X2 491 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 POLR1BQ9H9Y6 1135 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 NTN4Q9HB63 628 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 SMPD4Q9NXE4 827 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 CCL27Q9Y4X3 112 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 POLR3HQ9Y535 204 aaPredicted RBP14.06□□□□□ -0.16
CD48-201ENST00000368045 GREB1Q4ZG55 1949 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 A0A0J9YVX5 310 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 UPK1AO00322 258 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 ARHGEF15O94989 841 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 CPNE6O95741 557 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 GALTP07902 379 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 THRBP10828 461 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 SELPP16109 830 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 PCSK2P16519 638 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 DGKAP23743 735 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 RPL10P27635 214 aaKnown RBP14.06□□□□□ -0.16
CD48-201ENST00000368045 ARL1P40616 181 aaPredicted RBP14.06□□□□□ -0.16
CD48-201ENST00000368045 RHOAP61586 193 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 ARMC12Q5T9G4 340 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 RALGPS2Q86X27 583 aaPredicted RBP14.06□□□□□ -0.16
CD48-201ENST00000368045 OFCC1Q8IZS5 231 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 SLC13A3Q8WWT9 602 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 AURKBQ96GD4 344 aaPredicted RBP14.06□□□□□ -0.16
CD48-201ENST00000368045 MYO19Q96H55 970 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 KLF16Q9BXK1 252 aaPredicted RBP14.06□□□□□ -0.16
CD48-201ENST00000368045 LIN28AQ9H9Z2 209 aaKnown RBP14.06□□□□□ -0.16
CD48-201ENST00000368045 PREBQ9HCU5 417 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 MTRRQ9UBK8 725 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 EBF1Q9UH73 591 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 TRPS1Q9UHF7 1281 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 LRFN2Q9ULH4 789 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 USP22Q9UPT9 525 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 BACE2Q9Y5Z0 518 aa14.06□□□□□ -0.16
CD48-201ENST00000368045 NOL3O60936 208 aaKnown RBP14.05□□□□□ -0.16
CD48-201ENST00000368045 KATNA1O75449 491 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 SCELO95171 688 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 ALPLP05186 524 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 IL6P05231 212 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 MTPNP58546 118 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 TWF1Q12792 350 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 PMS2P3Q13401 168 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 TUBA3CQ13748 450 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 RAB39AQ14964 217 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 ABRAXAS2Q15018 415 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 RBM48Q5RL73 367 aaKnown RBP14.05□□□□□ -0.16
CD48-201ENST00000368045 CACHD1Q5VU97 1274 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 TTC23Q5W5X9 447 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 SULT1C3Q6IMI6 304 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 TTC23LQ6PF05 361 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 KCTD8Q6ZWB6 473 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 NPAS4Q8IUM7 802 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 SVOPLQ8N434 492 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 SDCCAG3Q96C92 435 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 ZNF583Q96ND8 569 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 C17orf80Q9BSJ5 609 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 SLC29A3Q9BZD2 475 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 GALNT8Q9NY28 637 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 IFT80Q9P2H3 777 aaPredicted RBP14.05□□□□□ -0.16
CD48-201ENST00000368045 DNAJB9Q9UBS3 223 aa14.05□□□□□ -0.16
CD48-201ENST00000368045 FAF1Q9UNN5 650 aaPredicted RBP14.05□□□□□ -0.16
CD48-201ENST00000368045 FNDC3AQ9Y2H6 1198 aaKnown RBP14.05□□□□□ -0.16
CD48-201ENST00000368045 THSD7BQ9C0I4 1608 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 TRBV5-4A0A0C4DH59 114 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 IQCF5A8MTL0 148 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 H0Y858 1186 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 H3BMQ9 156 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 GSTA4O15217 222 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 TSPAN3O60637 253 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 PGLSO95336 258 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 CLIC3O95833 236 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 CNPP09543 421 aaKnown RBP14.04□□□□□ -0.16
CD48-201ENST00000368045 SLC2A4P14672 509 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 HMGA1P17096 107 aaKnown RBP14.04□□□□□ -0.16
CD48-201ENST00000368045 ITGALP20701 1170 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 MAPK8P45983 427 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 PPP3CCP48454 512 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 PIK3CGP48736 1102 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 SELPLGQ14242 412 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 MYBPC3Q14896 1274 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 RFTN2Q52LD8 501 aaPredicted RBP14.04□□□□□ -0.16
CD48-201ENST00000368045 TBPL2Q6SJ96 375 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 PRSS55Q6UWB4 352 aaPredicted RBP14.04□□□□□ -0.16
CD48-201ENST00000368045 C16orf59Q7L2K0 433 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 TRIM46Q7Z4K8 759 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 SNX20Q7Z614 316 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 SERPINA9Q86WD7 417 aa14.04□□□□□ -0.16
CD48-201ENST00000368045 DCBLD1Q8N8Z6 715 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms