RNA–Protein interactions for RNA: ENST00000349062.6

TRIM4-201, Transcript of tripartite motif containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM4, Length 3,374 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4-201ENST00000349062 OR2T11Q8NH01 316 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 ALG14Q96F25 216 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 TOX2Q96NM4 488 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 TMEM106CQ9BVX2 250 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 ZNF225Q9UK10 706 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 OR51B4Q9Y5P0 310 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 MICAL3Q7RTP6 2002 aa13.69□□□□□ -0.22
TRIM4-201ENST00000349062 WASP42768 502 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 RGS4P49798 205 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 KCNK10P57789 538 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 ATP6V0D1P61421 351 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 INO80DQ53TQ3 878 aaPredicted RBP13.68□□□□□ -0.22
TRIM4-201ENST00000349062 PIGGQ5H8A4 983 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 MTX3Q5HYI7 312 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 RNF168Q8IYW5 571 aaPredicted RBP13.68□□□□□ -0.22
TRIM4-201ENST00000349062 CCT7Q99832 543 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 SLC25A23Q9BV35 468 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 SUV39H2Q9H5I1 410 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 BRD9Q9H8M2 597 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 TDP1Q9NUW8 608 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 DNMT3BQ9UBC3 853 aaKnown RBP13.68□□□□□ -0.22
TRIM4-201ENST00000349062 PCDHGA7Q9Y5G6 932 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 SMIM31A0A1B0GVY4 71 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 GREM1O60565 184 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 HK2P52789 917 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 AP1S1P61966 158 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 CRY1Q16526 586 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 C22orf39Q6P5X5 142 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 CCDC149Q6ZUS6 474 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 C2orf73Q8N5S3 287 aaPredicted RBP13.68□□□□□ -0.22
TRIM4-201ENST00000349062 DLG3Q92796 817 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 CIB1Q99828 191 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 ZBP1Q9H171 429 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 PCTPQ9UKL6 214 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 TMCO1Q9UM00 188 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 MRPS23Q9Y3D9 190 aaKnown RBP13.68□□□□□ -0.22
TRIM4-201ENST00000349062 WASH3PC4AMC7 463 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 TSPAN12O95859 305 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 ESR1P03372 595 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 CKMT2P17540 419 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 LHCGRP22888 699 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 ETV3P41162 512 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 MESP2Q0VG99 397 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 PTGR1Q14914 329 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 UGT3A2Q3SY77 523 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 C5orf22Q49AR2 442 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 ATP6AP1LQ52LC2 224 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 UGT2A3Q6UWM9 527 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 RBFAQ8N0V3 343 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 TBCDQ9BTW9 1192 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 SPAG4Q9NPE6 437 aa13.68□□□□□ -0.22
TRIM4-201ENST00000349062 OAS3Q9Y6K5 1087 aaKnown RBP13.68□□□□□ -0.22
TRIM4-201ENST00000349062 COL4A6Q14031 1691 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 CROCCQ5TZA2 2017 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 SCAMP1O15126 338 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 VILLO15195 856 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 PABPC1P11940 636 aaKnown RBP13.67□□□□□ -0.22
TRIM4-201ENST00000349062 METAP1P53582 386 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 GTF2H2Q13888 395 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 KRT80Q6KB66 452 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 GTF2H2CQ6P1K8 395 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 SLC2A7Q6PXP3 512 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 GOLGA7Q7Z5G4 137 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 METTL25Q8N6Q8 603 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 L3HYPDHQ96EM0 354 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 TCF12Q99081 682 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 COPS8Q99627 209 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 EMILIN2Q9BXX0 1053 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 ACTR8Q9H981 624 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 PFDN4Q9NQP4 134 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 VPS9D1Q9Y2B5 631 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 RNF11Q9Y3C5 154 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 GRM6O15303 877 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 RNASEH2AO75792 299 aaKnown RBP13.67□□□□□ -0.22
TRIM4-201ENST00000349062 EN2P19622 333 aaPredicted RBP13.67□□□□□ -0.22
TRIM4-201ENST00000349062 RPL10P27635 214 aaKnown RBP13.67□□□□□ -0.22
TRIM4-201ENST00000349062 SPAM1P38567 509 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 ABRAXAS2Q15018 415 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 MAPRE2Q15555 327 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 LILRA2Q8N149 483 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 LILRA3Q8N6C8 439 aaPredicted RBP13.67□□□□□ -0.22
TRIM4-201ENST00000349062 ACDQ96AP0 544 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 TMIGD2Q96BF3 282 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 TRMOQ9BU70 441 aa13.67□□□□□ -0.22
TRIM4-201ENST00000349062 RAD51BO15315 384 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 LEFTY1O75610 366 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 GSNP06396 782 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 PCNAP12004 261 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 CLCN7P51798 805 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 TNK2Q07912 1038 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 SF1Q15637 639 aaKnown RBP13.66□□□□□ -0.22
TRIM4-201ENST00000349062 SLC14A2Q15849 920 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 AP5B1Q2VPB7 878 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 USP45Q70EL2 814 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 ANKRD46Q86W74 232 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 TMC8Q8IU68 726 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 CMTR2Q8IYT2 770 aaKnown RBP13.66□□□□□ -0.22
TRIM4-201ENST00000349062 PELI3Q8N2H9 469 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 ZBTB2Q8N680 514 aa13.66□□□□□ -0.22
TRIM4-201ENST00000349062 PCYOX1LQ8NBM8 494 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms