RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 RIPK3Q9Y572 518 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 C2orf71A6NGG8 1288 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 KERAO60938 352 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 ALOX5P09917 674 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 GMFBP60983 142 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 SGCDQ92629 289 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 SNX27Q96L92 541 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 LPIN3Q9BQK8 851 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 TCAF1Q9Y4C2 921 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 KCNU1A8MYU2 1149 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 TMEM150CB9EJG8 249 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 BCKDKO14874 412 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 EFNA1P20827 205 aaPredicted RBP13.08□□□□□ -0.32
COL1A1-201ENST00000225964 PRKCHP24723 683 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 ATP5A1P25705 553 aaKnown RBP13.08□□□□□ -0.32
COL1A1-201ENST00000225964 COLEC12Q5KU26 742 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 OR4C6Q8NH72 309 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 GPR151Q8TDV0 419 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 POP5Q969H6 163 aaKnown RBP13.08□□□□□ -0.32
COL1A1-201ENST00000225964 ACSS3Q9H6R3 686 aa13.08□□□□□ -0.32
COL1A1-201ENST00000225964 WDR55Q9H6Y2 383 aaPredicted RBP13.08□□□□□ -0.32
COL1A1-201ENST00000225964 PRPF19Q9UMS4 504 aaKnown RBP13.08□□□□□ -0.32
COL1A1-201ENST00000225964 C8GP07360 202 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 C1QTNF8P60827 252 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 TAC4Q86UU9 113 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 TMEM192Q8IY95 271 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 VGLL2Q8N8G2 317 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 COQ8BQ96D53 544 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 DGAT2Q96PD7 388 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 MAGEH1Q9H213 219 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 DYTNA2CJ06 578 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 NOL4O94818 638 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 C4BPAP04003 597 aaKnown RBP13.07□□□□□ -0.32
COL1A1-201ENST00000225964 TPSB2P20231 275 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 NDST2P52849 883 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 TPSAB1Q15661 275 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 RBM44Q6ZP01 1051 aaKnown RBP13.07□□□□□ -0.32
COL1A1-201ENST00000225964 THAP5Q7Z6K1 395 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 PYROXD2Q8N2H3 581 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 RIT1Q92963 219 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 GTPBP3Q969Y2 492 aaKnown RBP13.07□□□□□ -0.32
COL1A1-201ENST00000225964 SLC25A36Q96CQ1 311 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 FUCA2Q9BTY2 467 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 TBC1D10AQ9BXI6 508 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 CALML5Q9NZT1 146 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 GRIP1Q9Y3R0 1128 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 AGLP35573 1532 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 A0A1W2PRU2 124 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 IFNW1P05000 195 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 SDC2P34741 201 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 CRHR1P34998 444 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 CLCQ05315 142 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 CERS6Q6ZMG9 384 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 LRRC55Q6ZSA7 311 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 ANKRD46Q86W74 232 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 TBC1D21Q8IYX1 336 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 Q8N9G6 341 aaPredicted RBP13.07□□□□□ -0.32
COL1A1-201ENST00000225964 C11orf24Q96F05 449 aaPredicted RBP13.07□□□□□ -0.32
COL1A1-201ENST00000225964 CLK4Q9HAZ1 481 aaKnown RBP13.07□□□□□ -0.32
COL1A1-201ENST00000225964 ZNF536O15090 1300 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 ELOVL7A1L3X0 281 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 SNX3O60493 162 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 RENP00797 406 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 BPGMP07738 259 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 PTDSS1P48651 473 aaKnown RBP13.07□□□□□ -0.32
COL1A1-201ENST00000225964 NCBP2P52298 156 aaKnown RBP eCLIP13.07□□□□□ -0.32
COL1A1-201ENST00000225964 CHAF1BQ13112 559 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 ZYG11AQ6WRX3 759 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 SLC38A4Q969I6 547 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 RAB21Q9UL25 225 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 GSC2O15499 205 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 KLRC4O43908 158 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 EOMESO95936 686 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 GDI2P50395 445 aaKnown RBP13.07□□□□□ -0.32
COL1A1-201ENST00000225964 PHC3Q8NDX5 983 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 CYB5D2Q8WUJ1 264 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 PSMG2Q969U7 264 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 GAL3ST1Q99999 423 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 FKBPLQ9UIM3 349 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 ARL5AQ9Y689 179 aa13.07□□□□□ -0.32
COL1A1-201ENST00000225964 PDPK1O15530 556 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 UNC5CO95185 931 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 ACVR2AP27037 513 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 NMBRP28336 390 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 TMEM145Q8NBT3 493 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 CARS2Q9HA77 564 aaKnown RBP13.06□□□□□ -0.32
COL1A1-201ENST00000225964 RNPEPL1Q9HAU8 725 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 ZNF726A6NNF4 738 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 CST3P01034 146 aaPredicted RBP13.06□□□□□ -0.32
COL1A1-201ENST00000225964 PRKCGP05129 697 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 HTR7P34969 479 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 SLC9B1Q4ZJI4 515 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 CHRDL2Q6WN34 429 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 SH3RF1Q7Z6J0 888 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 MSL3Q8N5Y2 521 aaKnown RBP13.06□□□□□ -0.32
COL1A1-201ENST00000225964 SLC22A17Q8WUG5 538 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 OVCA2Q8WZ82 227 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 RSL24D1Q9UHA3 163 aaKnown RBP13.06□□□□□ -0.32
COL1A1-201ENST00000225964 PCDHGB5Q9Y5G0 923 aa13.06□□□□□ -0.32
COL1A1-201ENST00000225964 MATN3O15232 486 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms