RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 USP2O75604 605 aaPredicted RBP13.39□□□□□ -0.27
SF3A1-201ENST00000215793 RLN1P04808 185 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 SCNN1AP37088 669 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 RPS14P62263 151 aaKnown RBP13.39□□□□□ -0.27
SF3A1-201ENST00000215793 AHSA2Q719I0 299 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 LAPTM4BQ86VI4 370 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 RANBP3LQ86VV4 465 aaPredicted RBP13.39□□□□□ -0.27
SF3A1-201ENST00000215793 SNX33Q8WV41 574 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 SLC13A3Q8WWT9 602 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 RBM18Q96H35 190 aaKnown RBP13.39□□□□□ -0.27
SF3A1-201ENST00000215793 TRNT1Q96Q11 434 aaKnown RBP13.39□□□□□ -0.27
SF3A1-201ENST00000215793 NID2Q14112 1375 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 FAM149AA5PLN7 773 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 YJEFN3A6XGL0 299 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 PTPN2P17706 415 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 AKT2P31751 481 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 CBX5P45973 191 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 PPP2R2BQ00005 443 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 MSANTD2Q6P1R3 559 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 P2RY8Q86VZ1 359 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 C2orf73Q8N5S3 287 aaPredicted RBP13.39□□□□□ -0.27
SF3A1-201ENST00000215793 LCN9Q8WX39 176 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 DIRAS2Q96HU8 199 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 ZNF514Q96K75 400 aaPredicted RBP13.39□□□□□ -0.27
SF3A1-201ENST00000215793 SEZ6LQ9BYH1 1024 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 PRRG4Q9BZD6 226 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 ACSS2Q9NR19 701 aa13.39□□□□□ -0.27
SF3A1-201ENST00000215793 PPLO60437 1756 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP13.38□□□□□ -0.27
SF3A1-201ENST00000215793 LRRC72A6NJI9 287 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 A8MUI8 341 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 AP2A2O94973 939 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 CCNB2O95067 398 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 CAP1Q01518 475 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 IL18Q14116 193 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 IFI44LQ53G44 452 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 PAOXQ6QHF9 649 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 OR10A6Q8NH74 314 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 PRICKLE1Q96MT3 831 aaPredicted RBP13.38□□□□□ -0.27
SF3A1-201ENST00000215793 TFB2MQ9H5Q4 396 aaKnown RBP13.38□□□□□ -0.27
SF3A1-201ENST00000215793 GRIN2DO15399 1336 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 MATN4O95460 622 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 C9P02748 559 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 ERVK-21P61565 698 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 GET4Q7L5D6 327 aaPredicted RBP13.38□□□□□ -0.27
SF3A1-201ENST00000215793 CADM2Q8N3J6 435 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 ZNF433Q8N7K0 673 aaPredicted RBP13.38□□□□□ -0.27
SF3A1-201ENST00000215793 GPER1Q99527 375 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 TRIM2Q9C040 744 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 FCF1Q9Y324 198 aaKnown RBP13.38□□□□□ -0.27
SF3A1-201ENST00000215793 SOWAHBA6NEL2 793 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 OR1F1O43749 312 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 SMPD1P17405 629 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 TNFAIP8L3Q5GJ75 292 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 ZNF311Q5JNZ3 666 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 LDLRAP1Q5SW96 308 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 OR52J3Q8NH60 311 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 PDE10AQ9Y233 779 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 IGKV6D-41A0A0C4DH26 115 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 PRODHO43272 600 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 METTL18O95568 372 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 SNAP47Q5SQN1 464 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 RAB43Q86YS6 212 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 SLAIN1Q8ND83 568 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 ZMIZ2Q8NF64 920 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 KCNN2Q9H2S1 579 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 CXorf21Q9HAI6 301 aa13.38□□□□□ -0.27
SF3A1-201ENST00000215793 DUS2Q9NX74 493 aaKnown RBP13.38□□□□□ -0.27
SF3A1-201ENST00000215793 ZNF282Q9UDV7 671 aaPredicted RBP13.38□□□□□ -0.27
SF3A1-201ENST00000215793 CXCR6O00574 342 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 NME6O75414 186 aaPredicted RBP13.37□□□□□ -0.27
SF3A1-201ENST00000215793 TCEA3O75764 348 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 CCNFP41002 786 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 CDH12P55289 794 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 ABATP80404 500 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 GAD2Q05329 585 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 SCN1BQ07699 218 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 TMEM44Q2T9K0 475 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 GPR33Q49SQ1 333 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 TMEM220Q6QAJ8 160 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 CCDC36Q8IYA8 594 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 ARL14EPQ8N8R7 260 aaPredicted RBP13.37□□□□□ -0.27
SF3A1-201ENST00000215793 FBXO22Q8NEZ5 403 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 WRAP53Q9BUR4 548 aaKnown RBP13.37□□□□□ -0.27
SF3A1-201ENST00000215793 CNPPD1Q9BV87 410 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 CADM1Q9BY67 442 aaKnown RBP13.37□□□□□ -0.27
SF3A1-201ENST00000215793 NKIRAS2Q9NYR9 191 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 PEX16Q9Y5Y5 336 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 ARHGEF28Q8N1W1 1705 aaKnown RBP13.37□□□□□ -0.27
SF3A1-201ENST00000215793 ACADLP28330 430 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 AP3S2P59780 193 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 CAMK1Q14012 370 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 ZDHHC21Q8IVQ6 265 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 ACDQ96AP0 544 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 RNF31Q96EP0 1072 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 ZBED6CLQ96FA7 236 aaPredicted RBP13.37□□□□□ -0.27
SF3A1-201ENST00000215793 NSMCE3Q96MG7 304 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 KLHL32Q96NJ5 620 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 CHCHD6Q9BRQ6 235 aa13.37□□□□□ -0.27
SF3A1-201ENST00000215793 MKL2Q9ULH7 1088 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms