RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 CCDC142Q17RM4 750 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF542PQ5EBM4 170 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 Q6ZSR6 202 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 KCNMB4Q86W47 210 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 DCAF4L2Q8NA75 395 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 GPT2Q8TD30 523 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 CKAP2Q8WWK9 683 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ELSPBP1Q96BH3 223 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ANKRD27Q96NW4 1050 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 HSD17B14Q9BPX1 270 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 CRB3Q9BUF7 120 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 EFCAB1Q9HAE3 211 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 KBTBD4Q9NVX7 518 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 POLHQ9Y253 713 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 SIGLEC1Q9BZZ2 1709 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ANKRD26Q9UPS8 1709 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 A8MVJ9 347 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 DHX15O43143 795 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 KCNJ13O60928 360 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 CBFA2T3O75081 653 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 CPN2P22792 545 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PRR5P85299 388 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PPP2R2BQ00005 443 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 MGAT5Q09328 741 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 TBX2Q13207 712 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PWP1Q13610 501 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 NDUFAF6Q330K2 333 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 INTS11Q5TA45 600 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 MTFR2Q6P444 385 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 KLHDC9Q8NEP7 349 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 KCNV2Q8TDN2 545 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 IPCEF1Q8WWN9 437 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 MIEF2Q96C03 454 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 ERP27Q96DN0 273 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 HIC2Q96JB3 615 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PLEKHG4BQ96PX9 1271 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 FOXQ1Q9C009 403 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 CCSER2Q9H7U1 834 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 BATF3Q9NR55 127 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 HPF1Q9NWY4 346 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PLCL2Q9UPR0 1127 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 DGKBQ9Y6T7 804 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 GFRA2O00451 464 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 TOP3BO95985 862 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 FHP07954 510 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 COL9A1P20849 921 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 L1CAMP32004 1257 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 CSNK1EP49674 416 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 HSD17B7P56937 341 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PSME3P61289 254 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 RACK1P63244 317 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 GALK2Q01415 458 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 RFTN2Q52LD8 501 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 PITRM1Q5JRX3 1037 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 C22orf39Q6P5X5 142 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 TP53INP2Q8IXH6 220 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 FAM81AQ8TBF8 368 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 SYN2Q92777 582 aaPredicted RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 APOL4Q9BPW4 351 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 HES7Q9BYE0 225 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 CEP41Q9BYV8 373 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 KLHL4Q9C0H6 718 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 REXO4Q9GZR2 422 aaKnown RBP4.96□□□□□ -1.62
SCN1A-218ENST00000640036 SLITRK2Q9H156 845 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 STRCQ7RTU9 1775 aa4.96□□□□□ -1.62
SCN1A-218ENST00000640036 AP3D1O14617 1153 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 BRINP1O60477 761 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 PRAMEF1O95521 474 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 RETP07949 1114 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 PAICSP22234 425 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 MAOBP27338 520 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 HOXA9P31269 272 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 RPL22P35268 128 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CCR8P51685 355 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 GMFBP60983 142 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CACNG1Q06432 222 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CAMK1Q14012 370 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 GJB7Q6PEY0 223 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 WDR59Q6PJI9 974 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 RTL4Q6ZR62 310 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ULK2Q8IYT8 1036 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ESX1Q8N693 406 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 TMEM178AQ8NBL3 297 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 C19orf18Q8NEA5 215 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 OR5B17Q8NGF7 314 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ZNF641Q96N77 438 aaPredicted RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 IL21RQ9HBE5 538 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 PIH1D1Q9NWS0 290 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CNTN3Q9P232 1028 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 RUVBL1Q9Y265 456 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 WBP11Q9Y2W2 641 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 MFHAS1Q9Y4C4 1052 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ESPL1Q14674 2120 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 ECI2O75521 394 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 SCGB2A1O75556 95 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 GOT1P17174 413 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 UBE2NP61088 152 aaKnown RBP4.95□□□□□ -1.62
SCN1A-218ENST00000640036 CYP4F2P78329 520 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 FCHO2Q0JRZ9 810 aa4.95□□□□□ -1.62
SCN1A-218ENST00000640036 NSDHLQ15738 373 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms