RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 TBC1D17Q9HA65 648 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 SGK2Q9HBY8 427 aa18.12■□□□□ 0.49
CLN3-254ENST00000637050 UBXN8O00124 270 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 NUAK1O60285 661 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 GPC4O75487 556 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 TGDSO95455 350 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 ZNF658BQ4V348 819 aaPredicted RBP18.11■□□□□ 0.49
CLN3-254ENST00000637050 SBSNQ6UWP8 590 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 ATG14Q6ZNE5 492 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 SPATA21Q7Z572 469 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 ADAMTSL2Q86TH1 951 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 PGBD3Q8N328 593 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 ASZ1Q8WWH4 475 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 ELMO1Q92556 727 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 SEC16BQ96JE7 1060 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 SORT1Q99523 831 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 DRC3Q9H069 523 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 CYP4F12Q9HCS2 524 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 NCKIPSDQ9NZQ3 722 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 GPR34Q9UPC5 381 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 CDYLQ9Y232 598 aa18.11■□□□□ 0.49
CLN3-254ENST00000637050 LRRC72A6NJI9 287 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 KLK8O60259 260 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 LYPLA1O75608 230 aaPredicted RBP18.1■□□□□ 0.49
CLN3-254ENST00000637050 SLCO2B1O94956 709 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 ZNF8P17098 575 aaPredicted RBP18.1■□□□□ 0.49
CLN3-254ENST00000637050 MAT2AP31153 395 aaKnown RBP18.1■□□□□ 0.49
CLN3-254ENST00000637050 IGFALSP35858 605 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 HSPA14Q0VDF9 509 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 OVGP1Q12889 678 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 GTF2H3Q13889 308 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 BOP1Q14137 746 aaKnown RBP18.1■□□□□ 0.49
CLN3-254ENST00000637050 NEK10Q6ZWH5 1172 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 GPSM1Q86YR5 675 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 TSTD1Q8NFU3 115 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 EXT2Q93063 718 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 CLDN23Q96B33 292 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 PHF21BQ96EK2 531 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 L3HYPDHQ96EM0 354 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 LINC00615Q96LM1 132 aaPredicted RBP18.1■□□□□ 0.49
CLN3-254ENST00000637050 TMEM237Q96Q45 408 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 LGR4Q9BXB1 951 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 WDR26Q9H7D7 661 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 TSR3Q9UJK0 312 aaKnown RBP18.1■□□□□ 0.49
CLN3-254ENST00000637050 TMCO1Q9UM00 188 aa18.1■□□□□ 0.49
CLN3-254ENST00000637050 TMEM202A6NGA9 273 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 SUPT3HB4E1H0 165 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 CHUKO15111 745 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 NPHS1O60500 1241 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 SUPT3HO75486 399 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 MPC1LP0DKB6 136 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 IMPDH1P20839 514 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 RCN2Q14257 317 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 PPP1R3AQ16821 1122 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 TMEM31Q5JXX7 168 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 ANO7Q6IWH7 933 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 VRK3Q8IV63 474 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 ZNF547Q8IVP9 402 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 MOCOSQ96EN8 888 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 FAM126AQ9BYI3 521 aaPredicted RBP18.09■□□□□ 0.49
CLN3-254ENST00000637050 CHRDQ9H2X0 955 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 PHPT1Q9NRX4 125 aaPredicted RBP18.09■□□□□ 0.49
CLN3-254ENST00000637050 TMEM98Q9Y2Y6 226 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 OR1A2Q9Y585 309 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 SLC5A10A0PJK1 596 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 SEMA4FO95754 770 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 GSTM1P09488 218 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 TROVE2P10155 538 aaKnown RBP eCLIP18.09■□□□□ 0.49
CLN3-254ENST00000637050 SERPINB5P36952 375 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 HK3P52790 923 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 HERVK_113P63132 956 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 GSTM4Q03013 218 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 NUMA1Q14980 2115 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 TGFBIQ15582 683 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 CRLF3Q8IUI8 442 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 TRAPPC5Q8IUR0 188 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 CACNA2D3Q8IZS8 1091 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 CCNYL1Q8N7R7 359 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 PTGR2Q8N8N7 351 aaPredicted RBP18.09■□□□□ 0.49
CLN3-254ENST00000637050 DENND6BQ8NEG7 585 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 PJA1Q8NG27 643 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 CNDP1Q96KN2 507 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 HHIPQ96QV1 700 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 ERVK-6Q9BXR3 956 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 ACSS2Q9NR19 701 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 KLHL14Q9P2G3 628 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 GULP1Q9UBP9 304 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 ADAMTS6Q9UKP5 1117 aa18.09■□□□□ 0.49
CLN3-254ENST00000637050 C17orf113A0A1B0GUU1 675 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 GPR89AB7ZAQ6 455 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 SLC31A1O15431 190 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 LATO43561 262 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 HSPA4LO95757 839 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 GPR89BP0CG08 455 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 MYCLP1P12525 358 aaPredicted RBP18.08■□□□□ 0.48
CLN3-254ENST00000637050 GFAPP14136 432 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 SF3A3Q12874 501 aaKnown RBP eCLIP18.08■□□□□ 0.48
CLN3-254ENST00000637050 PFKFB4Q16877 469 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 ZNF678Q5SXM1 525 aa18.08■□□□□ 0.48
CLN3-254ENST00000637050 FBXO39Q8N4B4 442 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms