RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 RAB11FIP2Q7L804 512 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 CLEC14AQ86T13 490 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 TRIM74Q86UV6 250 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 PIM3Q86V86 326 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 SPACA3Q8IXA5 215 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 NAGSQ8N159 534 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 TRAM1L1Q8N609 369 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 GSDMBQ8TAX9 411 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 PTCD2Q8WV60 388 aaKnown RBP12.47□□□□□ -0.41
PNKP-217ENST00000625216 EID2BQ96D98 161 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 FCRL3Q96P31 734 aaPredicted RBP12.47□□□□□ -0.41
PNKP-217ENST00000625216 RUFY1Q96T51 708 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 SH3GL2Q99962 352 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 DPYSL5Q9BPU6 564 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 TMEM109Q9BVC6 243 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 SPATA16Q9BXB7 569 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 IL22Q9GZX6 179 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 ACBD3Q9H3P7 528 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 ACSS3Q9H6R3 686 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 TRIM39Q9HCM9 518 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.47□□□□□ -0.41
PNKP-217ENST00000625216 SAMD15Q9P1V8 674 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 ZNHIT2Q9UHR6 403 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 ZNF711Q9Y462 761 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 TCAF1Q9Y4C2 921 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 PCDHGA7Q9Y5G6 932 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 ST14Q9Y5Y6 855 aa12.47□□□□□ -0.41
PNKP-217ENST00000625216 RP1P56715 2156 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 ZCWPW2A0A1B0GU75 182 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 FAM237BA0A1B0GVD1 139 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 FADS2P1A8MWK0 482 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 CASC3O15234 703 aaKnown RBP12.46□□□□□ -0.41
PNKP-217ENST00000625216 NUAK1O60285 661 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 SPAG6O75602 509 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 PIAS1O75925 651 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 SLC25A14O95258 325 aaPredicted RBP12.46□□□□□ -0.41
PNKP-217ENST00000625216 SYF2O95926 243 aaKnown RBP12.46□□□□□ -0.41
PNKP-217ENST00000625216 PIRTP0C851 137 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 SLC2A4P14672 509 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 NMBRP28336 390 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 GCAP28676 217 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 ALDH4A1P30038 563 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 PHBP35232 272 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 CLCNKAP51800 687 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 EIF3BP55884 814 aaKnown RBP12.46□□□□□ -0.41
PNKP-217ENST00000625216 IFFO1Q0D2I5 559 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 SEPT6Q14141 434 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 LONRF1Q17RB8 773 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 PCID2Q5JVF3 399 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 SPANXN3Q5MJ09 141 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 C3orf62Q6ZUJ4 267 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 B3GNT8Q7Z7M8 397 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 TMEM135Q86UB9 458 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 SFTPA2Q8IWL1 248 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 UNC5BQ8IZJ1 945 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 GPR26Q8NDV2 337 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 PPHLN1Q8NEY8 458 aaKnown RBP12.46□□□□□ -0.41
PNKP-217ENST00000625216 DTX3LQ8TDB6 740 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 KCNE4Q8WWG9 221 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 MFSD3Q96ES6 412 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 ZNF778Q96MU6 729 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 PLEKHG4BQ96PX9 1271 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 RANBP9Q96S59 729 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 CMKLR1Q99788 373 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 NAT9Q9BTE0 207 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 KIFC1Q9BW19 673 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 PRORYQ9H606 182 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 MRM3Q9HC36 420 aaKnown RBP12.46□□□□□ -0.41
PNKP-217ENST00000625216 CHRAC1Q9NRG0 131 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 SMYD2Q9NRG4 433 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 FAM53CQ9NYF3 392 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 HACD3Q9P035 362 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 AKAP7Q9P0M2 348 aaPredicted RBP12.46□□□□□ -0.41
PNKP-217ENST00000625216 CTNNAL1Q9UBT7 734 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 PLEKHM1Q9Y4G2 1056 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 SPO11Q9Y5K1 396 aa12.46□□□□□ -0.41
PNKP-217ENST00000625216 OAS3Q9Y6K5 1087 aaKnown RBP12.46□□□□□ -0.41
PNKP-217ENST00000625216 CACNA1GO43497 2377 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 NBEAQ8NFP9 2946 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 EXOC1LA0A1B0GW35 172 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 SMIM23A6NLE4 172 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 OR5K4A6NMS3 321 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 GRID2O43424 1007 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 USP1O94782 785 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 BPIP17213 487 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 CD1CP29017 333 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 STX2P32856 288 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 UGT1A5P35504 534 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 HMGCLP35914 325 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 SLCO1A2P46721 670 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 FASLGP48023 281 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 OR1D5P58170 312 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 GPLD1P80108 840 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 TRA2AQ13595 282 aaKnown RBP eCLIP12.45□□□□□ -0.42
PNKP-217ENST00000625216 KRT71Q3SY84 523 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 ANKRD20A4Q4UJ75 823 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 TTMPQ5BVD1 217 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 FOXR1Q6PIV2 292 aa12.45□□□□□ -0.42
PNKP-217ENST00000625216 CHST15Q7LFX5 561 aaPredicted RBP12.45□□□□□ -0.42
PNKP-217ENST00000625216 PHYKPLQ8IUZ5 450 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms