RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 INHBBP09529 407 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 FAM58BPP0C7Q3 252 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 FCGR2AP12318 317 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 ANXA7P20073 488 aaKnown RBP5.77□□□□□ -1.49
VPS53-219ENST00000576019 ACHEP22303 614 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 HOXA11P31270 313 aaPredicted RBP5.77□□□□□ -1.49
VPS53-219ENST00000576019 RFC2P35250 354 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 IL15P40933 162 aaPredicted RBP5.77□□□□□ -1.49
VPS53-219ENST00000576019 KCNJ1P48048 391 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 PDE1AP54750 535 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 ARSFP54793 590 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 HMGCS2P54868 508 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 CLDN2P57739 230 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 JAG1P78504 1218 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 ARF5P84085 180 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 HTD2P86397 168 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 PSG6Q00889 435 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 DRAP1Q14919 205 aaPredicted RBP5.77□□□□□ -1.49
VPS53-219ENST00000576019 PGM5Q15124 567 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 TAZQ16635 292 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 LRIF1Q5T3J3 769 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 AADACL2Q6P093 401 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 ARHGEF18Q6ZSZ5 1173 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 HDDC3Q8N4P3 179 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 NEK11Q8NG66 645 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 ST7LQ8TDW4 575 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 FAM151AQ8WW52 585 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 BICD1Q96G01 975 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 PIMREGQ9BSJ6 248 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 ABHD14AQ9BUJ0 271 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 C1QTNF5Q9BXJ0 243 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 DENND2DQ9H6A0 471 aaPredicted RBP5.77□□□□□ -1.49
VPS53-219ENST00000576019 DNAJC18Q9H819 358 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 IARS2Q9NSE4 1012 aaKnown RBP5.77□□□□□ -1.49
VPS53-219ENST00000576019 MTPAPQ9NVV4 582 aaKnown RBP eCLIP5.77□□□□□ -1.49
VPS53-219ENST00000576019 TMOD2Q9NZR1 351 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 FBXW11Q9UKB1 542 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 CDH7Q9ULB5 785 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 ICKQ9UPZ9 632 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 ZNF148Q9UQR1 794 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 IKBKGQ9Y6K9 419 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 SPENQ96T58 3664 aaKnown RBP5.77□□□□□ -1.49
VPS53-219ENST00000576019 ITPR2Q14571 2701 aa5.77□□□□□ -1.49
VPS53-219ENST00000576019 DOCK2Q92608 1830 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 LRRK2Q5S007 2527 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 SCO2A0A1W2PP80 73 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 CBY3A6NI87 242 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 CCDC188H7C350 402 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 SLC33A1O00400 549 aaPredicted RBP5.76□□□□□ -1.49
VPS53-219ENST00000576019 PRYO14603 147 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 CLIC2O15247 247 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 ZWINTO95229 277 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 IFNB1P01574 187 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 IL1AP01583 271 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 RETP07949 1114 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 ZNF182P17025 639 aaPredicted RBP5.76□□□□□ -1.49
VPS53-219ENST00000576019 KRT4P19013 534 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 CAMLGP49069 296 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 CSRP3P50461 194 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 ZNF81P51508 661 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 ADPRHP54922 357 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 CASP9P55211 416 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 TPTEP56180 551 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 ASIC1P78348 528 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 CCNA1P78396 465 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 DEFB103AP81534 67 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 AKAP17AQ02040 695 aaKnown RBP5.76□□□□□ -1.49
VPS53-219ENST00000576019 GRIK3Q13003 919 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 MYLK3Q32MK0 819 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 CDONQ4KMG0 1287 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 DAB2IPQ5VWQ8 1189 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 HIST2H2BCQ6DN03 193 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 HIST2H2BDQ6DRA6 164 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 SNRNP48Q6IEG0 339 aaKnown RBP5.76□□□□□ -1.49
VPS53-219ENST00000576019 ETFRF1Q6IPR1 90 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 ANKRD16Q6P6B7 361 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 LCTLQ6UWM7 567 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 KCTD9Q7L273 389 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 COPS6Q7L5N1 327 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 ZER1Q7Z7L7 766 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 TMEM132CQ8N3T6 1108 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 SLC4A11Q8NBS3 891 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.76□□□□□ -1.49
VPS53-219ENST00000576019 LPIN2Q92539 896 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 PRCCQ92733 491 aaPredicted RBP5.76□□□□□ -1.49
VPS53-219ENST00000576019 FKBP10Q96AY3 582 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 HES6Q96HZ4 224 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 ADAD1Q96M93 576 aaKnown RBP5.76□□□□□ -1.49
VPS53-219ENST00000576019 TESK2Q96S53 571 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 ZFP64Q9NPA5 681 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 TAS2R3Q9NYW6 316 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 EXO1Q9UQ84 846 aaKnown RBP5.76□□□□□ -1.49
VPS53-219ENST00000576019 MAP3K2Q9Y2U5 619 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 APC2O95996 2303 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 SPEF2Q9C093 1822 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 LRBAP50851 2863 aa5.76□□□□□ -1.49
VPS53-219ENST00000576019 NLRC5Q86WI3 1866 aa5.75□□□□□ -1.49
VPS53-219ENST00000576019 OGG1O15527 345 aa5.75□□□□□ -1.49
VPS53-219ENST00000576019 SLC25A17O43808 307 aa5.75□□□□□ -1.49
VPS53-219ENST00000576019 CNMDO75829 334 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms