RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 DDIASQ8IXT1 998 aa5.97□□□□□ -1.45
RTF1-204ENST00000558117 FSIP1Q8NA03 581 aa5.97□□□□□ -1.45
RTF1-204ENST00000558117 SPATA20Q8TB22 786 aa5.97□□□□□ -1.45
RTF1-204ENST00000558117 RLN3Q8WXF3 142 aa5.97□□□□□ -1.45
RTF1-204ENST00000558117 SKA1Q96BD8 255 aa5.97□□□□□ -1.45
RTF1-204ENST00000558117 SDCCAG3Q96C92 435 aa5.97□□□□□ -1.45
RTF1-204ENST00000558117 KTI12Q96EK9 354 aaPredicted RBP5.97□□□□□ -1.45
RTF1-204ENST00000558117 VCPIP1Q96JH7 1222 aa5.97□□□□□ -1.45
RTF1-204ENST00000558117 CNOT6LQ96LI5 555 aaKnown RBP5.97□□□□□ -1.45
RTF1-204ENST00000558117 CLSTN3Q9BQT9 956 aa5.97□□□□□ -1.45
RTF1-204ENST00000558117 FAM234AQ9H0X4 552 aa5.97□□□□□ -1.45
RTF1-204ENST00000558117 ZNF304Q9HCX3 659 aa5.97□□□□□ -1.45
RTF1-204ENST00000558117 PRG3Q9Y2Y8 225 aaPredicted RBP5.97□□□□□ -1.45
RTF1-204ENST00000558117 A6NNC1 897 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 FOXO6A8MYZ6 492 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 TRDMT1O14717 391 aaKnown RBP5.96□□□□□ -1.46
RTF1-204ENST00000558117 NEURL1O76050 574 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 LUC7L3O95232 432 aaKnown RBP5.96□□□□□ -1.46
RTF1-204ENST00000558117 FGF2P09038 288 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 PDHBP11177 359 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 HOXB9P17482 250 aaPredicted RBP5.96□□□□□ -1.46
RTF1-204ENST00000558117 DDIT3P35638 169 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 GAD2Q05329 585 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 KRTAP1-1Q07627 177 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 GRSF1Q12849 480 aaKnown RBP eCLIP5.96□□□□□ -1.46
RTF1-204ENST00000558117 ALKBH1Q13686 389 aaKnown RBP5.96□□□□□ -1.46
RTF1-204ENST00000558117 GALNT3Q14435 633 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 PRTGQ2VWP7 1150 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 ZNF484Q5JVG2 852 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 C6orf10Q5SRN2 563 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 ASPHD1Q5U4P2 390 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 PRSS55Q6UWB4 352 aaPredicted RBP5.96□□□□□ -1.46
RTF1-204ENST00000558117 RABEPKQ7Z6M1 372 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 KLBQ86Z14 1044 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 SCN4BQ8IWT1 228 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 TSTD1Q8NFU3 115 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 RPLP0P6Q8NHW5 317 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 CENPIQ92674 756 aaPredicted RBP5.96□□□□□ -1.46
RTF1-204ENST00000558117 SLC25A28Q96A46 364 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 LRRC3BQ96PB8 259 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 SEMA3CQ99985 751 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 TRIM31Q9BZY9 425 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 CPVLQ9H3G5 476 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 FBRSL1Q9HCM7 1045 aaKnown RBP5.96□□□□□ -1.46
RTF1-204ENST00000558117 SPAG4Q9NPE6 437 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 TMLHEQ9NVH6 421 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 TMEM248Q9NWD8 314 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 KLQ9UEF7 1012 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 SLC25A13Q9UJS0 675 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 PCDHA12Q9UN75 941 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 GPR52Q9Y2T5 361 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 MRPL11Q9Y3B7 192 aaKnown RBP5.96□□□□□ -1.46
RTF1-204ENST00000558117 PHLPP2Q6ZVD8 1323 aa5.96□□□□□ -1.46
RTF1-204ENST00000558117 HELZP42694 1942 aaKnown RBP5.95□□□□□ -1.46
RTF1-204ENST00000558117 ESYT2A0FGR8 921 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 FAM90A10PA6NDY2 464 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 ADAM12O43184 909 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 TNFSF14O43557 240 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 NDUFB8O95169 186 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 OAZ2O95190 189 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 VTNP04004 478 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 TK1P04183 234 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 ZNF883P0CG24 379 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 SNHG28P0DPA3 235 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 RXRAP19793 462 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 ARL4CP56559 192 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 ACTR2P61160 394 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 POU5F1Q01860 360 aaKnown RBP5.95□□□□□ -1.46
RTF1-204ENST00000558117 PDCD11Q14690 1871 aaKnown RBP5.95□□□□□ -1.46
RTF1-204ENST00000558117 CDC37Q16543 378 aaPredicted RBP5.95□□□□□ -1.46
RTF1-204ENST00000558117 USP41Q3LFD5 358 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 JAKMIP3Q5VZ66 844 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 HMBOX1Q6NT76 420 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 RFX8Q6ZV50 586 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 CCDC89Q8N998 374 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 C2CD4CQ8TF44 421 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 MOCOSQ96EN8 888 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP5.95□□□□□ -1.46
RTF1-204ENST00000558117 DOCK5Q9H7D0 1870 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 Q9N2J8 555 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 TLR8Q9NR97 1041 aaKnown RBP5.95□□□□□ -1.46
RTF1-204ENST00000558117 ZBTB40Q9NUA8 1239 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 THAP1Q9NVV9 213 aa5.95□□□□□ -1.46
RTF1-204ENST00000558117 TMEM272A0A1B0GTI8 110 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 VPS37CA5D8V6 355 aaPredicted RBP5.94□□□□□ -1.46
RTF1-204ENST00000558117 STX16-NPEPL1H3BU86 382 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 STX16O14662 325 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 KLK10O43240 276 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 STAM2O75886 525 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 CRYABP02511 175 aaKnown RBP5.94□□□□□ -1.46
RTF1-204ENST00000558117 RNF224P0DH78 156 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 ARSAP15289 507 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 PTPN2P17706 415 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 TNFRSF1BP20333 461 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 TYK2P29597 1187 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 HOXA13P31271 388 aaPredicted RBP5.94□□□□□ -1.46
RTF1-204ENST00000558117 STAT1P42224 750 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 PMPCAQ10713 525 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 GRIK2Q13002 908 aa5.94□□□□□ -1.46
RTF1-204ENST00000558117 NUGGCQ68CJ6 796 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms