RNA–Protein interactions for RNA: ENST00000554437.5

SCFD1-211, Transcript of sec1 family domain containing 1, humanhuman

TSL 3

Gene SCFD1, Length 688 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-211ENST00000554437 PLK4O00444 970 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 P4HA2O15460 535 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 SYNGR3O43761 229 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 FGF17O60258 216 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 DKC1O60832 514 aaKnown RBP eCLIP4.82□□□□□ -1.64
SCFD1-211ENST00000554437 GJB3O75712 270 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 RSL1D1O76021 490 aaKnown RBP4.82□□□□□ -1.64
SCFD1-211ENST00000554437 BMP10O95393 424 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 DNTTP04053 509 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 KRT19P08727 400 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 CTAGE8P0CG41 777 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 AKR1B1P15121 316 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 MARK3P27448 753 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 HOXA1P49639 335 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-211ENST00000554437 CLK1P49759 484 aaKnown RBP4.82□□□□□ -1.64
SCFD1-211ENST00000554437 SUOXP51687 545 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 RPL24P83731 157 aaKnown RBP4.82□□□□□ -1.64
SCFD1-211ENST00000554437 KRT33BQ14525 404 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 SMIM29Q86T20 159 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 GALNT13Q8IUC8 556 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 CTAGE4Q8IX94 777 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 CIARTQ8N365 385 aaPredicted RBP4.82□□□□□ -1.64
SCFD1-211ENST00000554437 RBM15BQ8NDT2 890 aaKnown RBP4.82□□□□□ -1.64
SCFD1-211ENST00000554437 SLC24A4Q8NFF2 622 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 LRRC59Q96AG4 307 aaKnown RBP4.82□□□□□ -1.64
SCFD1-211ENST00000554437 VMP1Q96GC9 406 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 CEP295NLQ96MC4 621 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 TRMT61BQ9BVS5 477 aaKnown RBP4.82□□□□□ -1.64
SCFD1-211ENST00000554437 SEMA6AQ9H2E6 1030 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 ZFP57Q9NU63 452 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 ARHGEF38Q9NXL2 777 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 DNAJB4Q9UDY4 337 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 GIMAP2Q9UG22 337 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 ZNF112Q9UJU3 913 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 YIPF1Q9Y548 306 aa4.82□□□□□ -1.64
SCFD1-211ENST00000554437 IGLV5-45A0A087WSX0 123 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 P2RY10O00398 339 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 WISP2O76076 250 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 TUBBP07437 444 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 CSF2RAP15509 400 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 PORP16435 677 aaPredicted RBP4.81□□□□□ -1.64
SCFD1-211ENST00000554437 NMBRP28336 390 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 EPS8Q12929 822 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 GAGE5Q13069 117 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 GAGE6Q13070 117 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 RAB6CQ53S08 254 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 SLC26A9Q7LBE3 791 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 NFE4Q86UQ8 179 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 ZNF713Q8N859 430 aaPredicted RBP4.81□□□□□ -1.64
SCFD1-211ENST00000554437 POC5Q8NA72 575 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 AFAP1L1Q8TED9 768 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 ABHD8Q96I13 439 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 RAB6CQ9H0N0 254 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 MMP28Q9H239 520 aa4.81□□□□□ -1.64
SCFD1-211ENST00000554437 UPF2Q9HAU5 1272 aaKnown RBP4.81□□□□□ -1.64
SCFD1-211ENST00000554437 CFDP1Q9UEE9 299 aaPredicted RBP4.81□□□□□ -1.64
SCFD1-211ENST00000554437 NOTCH4Q99466 2003 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 TNFSF12-TNFSF13A0A0A6YY99 330 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 OR2M5A3KFT3 312 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 OR2A25A4D2G3 310 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 FAM172BPA6NC97 362 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 NDUFS4O43181 175 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 IGHV4-39P01824 125 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 TFAP2AP05549 437 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 UMODP07911 640 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 SELLP14151 372 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 NRIP1P48552 1158 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 PHEXP78562 749 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 TMF1P82094 1093 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 ASPRV1Q53RT3 343 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 C9orf50Q5SZB4 431 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 PLXDC2Q6UX71 529 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 TRMT1LQ7Z2T5 733 aaKnown RBP4.8□□□□□ -1.64
SCFD1-211ENST00000554437 PIWIL4Q7Z3Z4 852 aaKnown RBP4.8□□□□□ -1.64
SCFD1-211ENST00000554437 AACSQ86V21 672 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 LONP2Q86WA8 852 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 LRRC8CQ8TDW0 803 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 JAKMIP2Q96AA8 810 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 RADILQ96JH8 1075 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 UHRF2Q96PU4 802 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 BAG1Q99933 345 aaPredicted RBP4.8□□□□□ -1.64
SCFD1-211ENST00000554437 RTN4RQ9BZR6 473 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 DENND2DQ9H6A0 471 aaPredicted RBP4.8□□□□□ -1.64
SCFD1-211ENST00000554437 CHMP1AQ9HD42 196 aaPredicted RBP4.8□□□□□ -1.64
SCFD1-211ENST00000554437 TAS2R14Q9NYV8 317 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 AMACRQ9UHK6 382 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 PLAGL1Q9UM63 463 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 PCDHGB4Q9UN71 923 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 TMEM5Q9Y2B1 443 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 SNX5Q9Y5X3 404 aa4.8□□□□□ -1.64
SCFD1-211ENST00000554437 ZNF644Q9H582 1327 aaPredicted RBP4.79□□□□□ -1.64
SCFD1-211ENST00000554437 A0A0G2JNG1 304 aa4.79□□□□□ -1.64
SCFD1-211ENST00000554437 LNP1A1A4G5 178 aa4.79□□□□□ -1.64
SCFD1-211ENST00000554437 C5orf60A6NFR6 353 aa4.79□□□□□ -1.64
SCFD1-211ENST00000554437 PAPSS1O43252 624 aaPredicted RBP4.79□□□□□ -1.64
SCFD1-211ENST00000554437 CTSVO60911 334 aa4.79□□□□□ -1.64
SCFD1-211ENST00000554437 PDE9AO76083 593 aa4.79□□□□□ -1.64
SCFD1-211ENST00000554437 STARD3NLO95772 234 aa4.79□□□□□ -1.64
SCFD1-211ENST00000554437 LIPFP07098 398 aa4.79□□□□□ -1.64
SCFD1-211ENST00000554437 PRLRP16471 622 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms