RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 CYP4V2Q6ZWL3 525 aaPredicted RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 STRA8Q7Z7C7 330 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 SLCO6A1Q86UG4 719 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 PLCZ1Q86YW0 608 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ADGRG5Q8IZF4 528 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 FAM71DQ8N9W8 422 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 OR7A2PQ8NGA2 310 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 MAPK15Q8TD08 544 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 RBBP8Q99708 897 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 NXF3Q9H4D5 531 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 MEAF6Q9HAF1 191 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 PRDM5Q9NQX1 630 aaPredicted RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 MTMR10Q9NXD2 777 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 AGO2Q9UKV8 859 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 MKLN1Q9UL63 735 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ERVW-1Q9UQF0 538 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 PIN4Q9Y237 131 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 NDUFAF1Q9Y375 327 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 MYO16Q9Y6X6 1858 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 PRORSD1PA6NEY8 169 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ZNF99A8MXY4 864 aaPredicted RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 E7ENX8 843 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 TMX2-CTNND1H3BSU7 103 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 PDPK1O15530 556 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 KCNJ13O60928 360 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 TNFRSF21O75509 655 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 YES1P07947 543 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 SNRPB2P08579 225 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 RBL1P28749 1068 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ALDH3A2P51648 485 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 KPNA2P52292 529 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 PKNOX1P55347 436 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 OGDHQ02218 1023 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 CREMQ03060 361 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 SEMA3BQ13214 749 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 TUSC3Q13454 348 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 BMPR2Q13873 1038 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ODF1Q14990 250 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 RFX4Q33E94 735 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 TBCELQ5QJ74 424 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 SYT6Q5T7P8 510 aaPredicted RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 DGLUCYQ7Z3D6 616 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 RAB44Q7Z6P3 723 aaPredicted RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 UBQLNLQ8IYU4 475 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 OR52E4Q8NGH9 312 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 NCLNQ969V3 563 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 CCDC126Q96EE4 140 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 GUCD1Q96NT3 240 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ZNF300Q96RE9 604 aaPredicted RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 CDCA3Q99618 268 aaPredicted RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 CGRRF1Q99675 332 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 APOL4Q9BPW4 351 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 NUDT16L1Q9BRJ7 211 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 ZNF670Q9BS34 389 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 BDH2Q9BUT1 245 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 KIFC1Q9BW19 673 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 DSN1Q9H410 356 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 CCNB1IP1Q9NPC3 277 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 RAB6BQ9NRW1 208 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 RASSF1Q9NS23 344 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 TMEM216Q9P0N5 145 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 EDARQ9UNE0 448 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 PCDHB7Q9Y5E2 793 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 BACE2Q9Y5Z0 518 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 PNMA8CA0A1B0GUJ8 204 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 CENPXA8MT69 81 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 LOC110117498-PIK3R3F6TDL0 507 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 UBXN8O00124 270 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 AP3B1O00203 1094 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 CNTN5O94779 1100 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 TRUB2O95900 331 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 KRT19P08727 400 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ACRP10323 421 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 JUNDP17535 347 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 TFEBP19484 476 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 TYMPP19971 482 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 GALK2Q01415 458 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 PIWIL4Q7Z3Z4 852 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 PROSER1Q86XN7 944 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 RFX6Q8HWS3 928 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 CBWD2Q8IUF1 395 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 UTP15Q8TED0 518 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 ZFP90Q8TF47 636 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 BCL7CQ8WUZ0 217 aaPredicted RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 PIK3R3Q92569 461 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 FCGR1BQ92637 280 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 PPWD1Q96BP3 646 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 MCEEQ96PE7 176 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 TARS2Q9BW92 718 aaKnown RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 GATA5Q9BWX5 397 aaPredicted RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 TRIM54Q9BYV2 358 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 POLMQ9NP87 494 aaPredicted RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 ACOXLQ9NUZ1 547 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ADA2Q9NZK5 511 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 CHD7Q9P2D1 2997 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 ZNF624Q9P2J8 865 aaPredicted RBP5.2□□□□□ -1.58
USP28-213ENST00000544967 ZNF229Q9UJW7 825 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 STOML2Q9UJZ1 356 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 SNX7Q9UNH6 387 aa5.2□□□□□ -1.58
USP28-213ENST00000544967 REV3LO60673 3130 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms