RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 NECTIN4Q96NY8 510 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 IER2Q9BTL4 223 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 C1orf112Q9NSG2 853 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 TRMT13Q9NUP7 481 aaKnown RBP9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 FAM105AQ9NUU6 356 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 OXSMQ9NWU1 459 aa9.37□□□□□ -0.91
CTNNA1-243ENST00000540387 TCRBV5S1A1TA0A578 114 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 H3BQ06 376 aaPredicted RBP9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 INPP4BO15327 924 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 KCNN4O15554 427 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 CYP3A5P20815 502 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 GNA15P30679 374 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 CSTF2P33240 577 aaKnown RBP eCLIP9.36□□□□□ -0.912e-8■□□□□ 9.7
CTNNA1-243ENST00000540387 ALDH3A2P51648 485 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 EFNA5P52803 228 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 NOMO1Q15155 1222 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 VARS2Q5ST30 1063 aaKnown RBP9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 HACD2Q6Y1H2 254 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 CREB3L2Q70SY1 520 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 BEND5Q7L4P6 421 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 FAM35AQ86V20 835 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 ARRDC4Q8NCT1 418 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 VANGL1Q8TAA9 524 aaPredicted RBP9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 BBS2Q9BXC9 721 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 SDCBP2Q9H190 292 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 C14orf119Q9NWQ9 140 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 INTS6Q9UL03 887 aaKnown RBP9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 TBC1D24Q9ULP9 559 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 ZNF175Q9Y473 711 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 PCDHGB1Q9Y5G3 927 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 LINC00862A6NCI5 91 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 MOXD2PA6NHM9 499 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 EFCAB9A8MZ26 197 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 ARPC2O15144 300 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 B4GALT5O43286 388 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 GPR32O75388 356 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 SNX4O95219 450 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 MSH3P20585 1137 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 PSMB9P28065 219 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 MAGEA6P43360 314 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 PRIM2P49643 509 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 PTPN5P54829 565 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 SLC12A2P55011 1212 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 IRF9Q00978 393 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 MBTD1Q05BQ5 628 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 POU5F1BQ06416 359 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 DAG1Q14118 895 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 SQLEQ14534 574 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 BTBD16Q32M84 506 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 PYCR3Q53H96 274 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 CES5AQ6NT32 575 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 FBXO46Q6PJ61 603 aaPredicted RBP9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 CYS1Q717R9 158 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 PRSS42Q7Z5A4 293 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 C11orf96Q7Z7L8 435 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 LIX1LQ8IVB5 337 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 ARFGAP1Q8N6T3 406 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 NIPA2Q8N8Q9 360 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 MCUQ8NE86 351 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 WNT8BQ93098 351 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 NXPE3Q969Y0 559 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 LRCH3Q96II8 777 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 TSEN34Q9BSV6 310 aaKnown RBP9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 HDHD5Q9BXW7 423 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 HAPLN2Q9GZV7 340 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 FZD8Q9H461 694 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 NGRNQ9NPE2 291 aaKnown RBP9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 TMEM39AQ9NV64 488 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 EVA1BQ9NVM1 165 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 KLHL42Q9P2K6 505 aa9.36□□□□□ -0.91
CTNNA1-243ENST00000540387 MKI67P46013 3256 aaKnown RBP9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 A0A1W2PQ45 241 aaPredicted RBP9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 A0A1W2PQY0 241 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 WDR27A2RRH5 827 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 CABYRO75952 493 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 OR5F1O95221 314 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 MED26O95402 600 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 ALPLP05186 524 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 HOXD4P09016 255 aaPredicted RBP9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 MTHFD1P11586 935 aaKnown RBP9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 TCF3P15923 654 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 ZNF30P17039 623 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 SLC15A1P46059 708 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 NAGLUP54802 743 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 NFE2L1Q14494 772 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 TTC23Q5W5X9 447 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 ANKS3Q6ZW76 656 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 RBM23Q86U06 439 aaKnown RBP9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 TMEM199Q8N511 208 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 FNDC5Q8NAU1 212 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 KCTD6Q8NC69 237 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 ZBTB44Q8NCP5 570 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 ZMIZ2Q8NF64 920 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 SLC22A8Q8TCC7 542 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 CPB2Q96IY4 423 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 ZNF578Q96N58 590 aaPredicted RBP9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 OPALINQ96PE5 141 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 OSMRQ99650 979 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 SLC30A3Q99726 388 aa9.35□□□□□ -0.91
CTNNA1-243ENST00000540387 SLC25A23Q9BV35 468 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms