RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 OR2AG2A6NM03 316 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 GRID2O43424 1007 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 SDC3O75056 442 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 SPAG6O75602 509 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 GSTA2P09210 222 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 CTSEP14091 401 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 ATP1B2P14415 290 aaPredicted RBP9.88□□□□□ -0.83
NUP54-203ENST00000504173 ZNF7P17097 686 aaPredicted RBP9.88□□□□□ -0.83
NUP54-203ENST00000504173 MCM3P25205 808 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 EPHA8P29322 1005 aaPredicted RBP9.88□□□□□ -0.83
NUP54-203ENST00000504173 NSG1P42857 185 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 SLC1A2P43004 574 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 CTSCP53634 463 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 RIPPLY3P57055 190 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 VSNL1P62760 191 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 B4GALNT1Q00973 533 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 MGAT5Q09328 741 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 FRG1Q14331 258 aaKnown RBP9.88□□□□□ -0.83
NUP54-203ENST00000504173 SLMAPQ14BN4 828 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 TCEA2Q15560 299 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 TYSND1Q2T9J0 566 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 PYCR3Q53H96 274 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 PRRT3Q5FWE3 981 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 RNF187Q5TA31 235 aaPredicted RBP9.88□□□□□ -0.83
NUP54-203ENST00000504173 TMEM220Q6QAJ8 160 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 PACS1Q6VY07 963 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 C3orf62Q6ZUJ4 267 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 LRRTM4Q86VH4 590 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 CILP2Q8IUL8 1156 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 RELL1Q8IUW5 271 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 DENND6AQ8IWF6 608 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 LMNTD2Q8IXW0 634 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 RASGEF1AQ8N9B8 481 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 SCG3Q8WXD2 468 aaKnown RBP9.88□□□□□ -0.83
NUP54-203ENST00000504173 SGF29Q96ES7 293 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 CCDC97Q96F63 343 aaPredicted RBP9.88□□□□□ -0.83
NUP54-203ENST00000504173 SCARF2Q96GP6 870 aaPredicted RBP9.88□□□□□ -0.83
NUP54-203ENST00000504173 ZNF514Q96K75 400 aaPredicted RBP9.88□□□□□ -0.83
NUP54-203ENST00000504173 TCF12Q99081 682 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 LRRC61Q9BV99 259 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 SEMA4CQ9C0C4 833 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 CLPBQ9H078 707 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 TCEAL2Q9H3H9 227 aaPredicted RBP9.88□□□□□ -0.83
NUP54-203ENST00000504173 CDC42EP4Q9H3Q1 356 aaKnown RBP9.88□□□□□ -0.83
NUP54-203ENST00000504173 CAAP1Q9H8G2 361 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 VPS37BQ9H9H4 285 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 TM7SF3Q9NS93 570 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 NINJ2Q9NZG7 142 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 ANKMY1Q9P2S6 941 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 FBXO5Q9UKT4 447 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 VPS9D1Q9Y2B5 631 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 PRKAB1Q9Y478 270 aa9.88□□□□□ -0.83
NUP54-203ENST00000504173 GOLGA4Q13439 2230 aaKnown RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 TCRBV9S1A1TA0A576 114 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 F8W8V4 182 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 QSOX1O00391 747 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 PRMT5O14744 637 aaPredicted RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 CHUKO15111 745 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 KMOO15229 486 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 RRP8O43159 456 aaKnown RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 OR1I1O60431 355 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 PIAS2O75928 621 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 AP2A2O94973 939 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 ACSL3O95573 720 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 FUCA1P04066 466 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 FAM153BP0C7A2 387 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 MYBL2P10244 700 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 ACP5P13686 325 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 PBLDP30039 288 aaPredicted RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 STX2P32856 288 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 PHBP35232 272 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 PRLHRP49683 370 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 EIF3BP55884 814 aaKnown RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 GPX6P59796 221 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 MPP1Q00013 466 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 RHDQ02161 417 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 ILF3Q12906 894 aaKnown RBP eCLIP9.87□□□□□ -0.834e-6■■□□□ 12
NUP54-203ENST00000504173 BNIP3Q12983 259 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 CTBP1Q13363 440 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 C1orf61Q13536 156 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 ELOCQ15369 112 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 SHBQ15464 509 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 KYNUQ16719 465 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 INSCQ1MX18 579 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 PLA2G4EQ3MJ16 856 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 FAM153CQ494X1 144 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 BCL7AQ4VC05 210 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 TAF1BQ53T94 588 aaPredicted RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 CHST15Q7LFX5 561 aaPredicted RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 GATAD2AQ86YP4 633 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 FSTL5Q8N475 847 aaPredicted RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 CLDN19Q8N6F1 224 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 ZNF548Q8NEK5 533 aaPredicted RBP9.87□□□□□ -0.83
NUP54-203ENST00000504173 LMX1AQ8TE12 382 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 NAT14Q8WUY8 206 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.87□□□□□ -0.83
NUP54-203ENST00000504173 CDKL2Q92772 493 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 GSDMCQ9BYG8 508 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 TMEM168Q9H0V1 697 aa9.87□□□□□ -0.83
NUP54-203ENST00000504173 LRRC4CQ9HCJ2 640 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 115.6 ms