RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 CYS1Q717R9 158 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 KANSL1Q7Z3B3 1105 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 SPNS2Q8IVW8 549 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 SFTPA2Q8IWL1 248 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 OR2L2Q8NH16 312 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 SCG3Q8WXD2 468 aaKnown RBP11.69□□□□□ -0.54
CUX1-210ENST00000497815 FAM122AQ96E09 287 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 LINC00615Q96LM1 132 aaPredicted RBP11.69□□□□□ -0.54
CUX1-210ENST00000497815 CPNE1Q99829 537 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 ACSS3Q9H6R3 686 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 PRDM8Q9NQV8 689 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 TAAR2Q9P1P5 351 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 GALPQ9UBC7 116 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 TSR3Q9UJK0 312 aaKnown RBP11.69□□□□□ -0.54
CUX1-210ENST00000497815 PSMD13Q9UNM6 376 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 BTBD3Q9Y2F9 522 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 DNMT3AQ9Y6K1 912 aaPredicted RBP11.69□□□□□ -0.54
CUX1-210ENST00000497815 CSNK1G3Q9Y6M4 447 aa11.69□□□□□ -0.54
CUX1-210ENST00000497815 EXOC1LA0A1B0GW35 172 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 H3BMM5 538 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 TRIM38O00635 465 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 EML2O95834 649 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 ABHD2P08910 425 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 ALPPL2P10696 532 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 MYF5P13349 255 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 CD59P13987 128 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 IDSP22304 550 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 CCR7P32248 378 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 GP5P40197 560 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 PREPP48147 710 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 ADARP55265 1226 aaKnown RBP11.68□□□□□ -0.54
CUX1-210ENST00000497815 HSPA14Q0VDF9 509 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 KLHL38Q2WGJ6 581 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 GALNT7Q86SF2 657 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 ZC3HC1Q86WB0 502 aaKnown RBP11.68□□□□□ -0.54
CUX1-210ENST00000497815 SIDT2Q8NBJ9 832 aaKnown RBP11.68□□□□□ -0.54
CUX1-210ENST00000497815 MYRIPQ8NFW9 859 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 HM13Q8TCT9 377 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 RHBDD1Q8TEB9 315 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 CAVIN3Q969G5 261 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 ELMO2Q96JJ3 720 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 CAMK1GQ96NX5 476 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 PANX3Q96QZ0 392 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 AARSD1Q9BTE6 412 aaKnown RBP11.68□□□□□ -0.54
CUX1-210ENST00000497815 EPB41L4BQ9H329 900 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 COG4Q9H9E3 785 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 GULP1Q9UBP9 304 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 TBC1D29Q9UFV1 150 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 PCDHGB2Q9Y5G2 931 aa11.68□□□□□ -0.54
CUX1-210ENST00000497815 RALGAPA1Q6GYQ0 2036 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 FAM95CA0A1B0GW59 222 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 FLRT2O43155 660 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 SIGLEC6O43699 453 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 SH3BP5O60239 455 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 KCNJ13O60928 360 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 VPS26AO75436 327 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 GIMD1P0DJR0 217 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 HSD17B3P37058 310 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 GRK6P43250 576 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 CLCNKAP51800 687 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 PGGT1BP53609 377 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 CDKN2DP55273 166 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 DMPKQ09013 629 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 SLC14A1Q13336 389 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 NAB1Q13506 487 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 TMED2Q15363 201 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 INAVAQ3KP66 663 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 MAP9Q49MG5 647 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 HECTD2Q5U5R9 776 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 METRNLQ641Q3 311 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 XKR5Q6UX68 686 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 OTOAQ7RTW8 1153 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 ALYREFQ86V81 257 aaKnown RBP11.67□□□□□ -0.54
CUX1-210ENST00000497815 PIM3Q86V86 326 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 NAXDQ8IW45 347 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 ACVR1CQ8NER5 493 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 OR4C6Q8NH72 309 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 ZDHHC1Q8WTX9 485 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 PATE1Q8WXA2 126 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 VPS39Q96JC1 886 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 PAFAH2Q99487 392 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 GPR21Q99679 349 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 RBBP8Q99708 897 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 SLC30A3Q99726 388 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 FUT8Q9BYC5 575 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 WWP1Q9H0M0 922 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 RHOJQ9H4E5 214 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 NLGN3Q9NZ94 848 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 WDR37Q9Y2I8 494 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 MTO1Q9Y2Z2 717 aaKnown RBP11.67□□□□□ -0.54
CUX1-210ENST00000497815 COMMD10Q9Y6G5 202 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 IKBKGQ9Y6K9 419 aa11.67□□□□□ -0.54
CUX1-210ENST00000497815 FRYLO94915 3013 aa11.66□□□□□ -0.54
CUX1-210ENST00000497815 C17orf113A0A1B0GUU1 675 aa11.66□□□□□ -0.54
CUX1-210ENST00000497815 KLHL33A6NCF5 533 aa11.66□□□□□ -0.54
CUX1-210ENST00000497815 TPP1O14773 563 aa11.66□□□□□ -0.54
CUX1-210ENST00000497815 LIN7AO14910 233 aaPredicted RBP11.66□□□□□ -0.54
CUX1-210ENST00000497815 CTIFO43310 598 aaKnown RBP11.66□□□□□ -0.54
CUX1-210ENST00000497815 ERLIN1O75477 346 aa11.66□□□□□ -0.54
CUX1-210ENST00000497815 SHBGP04278 402 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms