RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-208ENST00000494728 AMZ2Q86W34 360 aa11.4□□□□□ -0.58
VTI1A-208ENST00000494728 AVL9Q8NBF6 648 aa11.4□□□□□ -0.58
VTI1A-208ENST00000494728 OR4K2Q8NGD2 314 aa11.4□□□□□ -0.58
VTI1A-208ENST00000494728 STARD8Q92502 1023 aa11.4□□□□□ -0.58
VTI1A-208ENST00000494728 CXorf40BQ96DE9 158 aa11.4□□□□□ -0.58
VTI1A-208ENST00000494728 RMDN2Q96LZ7 410 aa11.4□□□□□ -0.58
VTI1A-208ENST00000494728 PPM1MQ96MI6 270 aa11.4□□□□□ -0.58
VTI1A-208ENST00000494728 PANX2Q96RD6 677 aa11.4□□□□□ -0.58
VTI1A-208ENST00000494728 INSM2Q96T92 566 aaPredicted RBP11.4□□□□□ -0.58
VTI1A-208ENST00000494728 ULBP3Q9BZM4 244 aa11.4□□□□□ -0.58
VTI1A-208ENST00000494728 TRHDEQ9UKU6 1024 aa11.4□□□□□ -0.58
VTI1A-208ENST00000494728 PACSIN2Q9UNF0 486 aaPredicted RBP11.4□□□□□ -0.58
VTI1A-208ENST00000494728 PKP3Q9Y446 797 aa11.4□□□□□ -0.58
VTI1A-208ENST00000494728 IGHV5-51A0A0C4DH38 117 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 STX7O15400 261 aaKnown RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 RASSF9O75901 435 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 SRP72O76094 671 aaKnown RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 FURINP09958 794 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 RBP3P10745 1247 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 MTHFD1P11586 935 aaKnown RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 AMD1P17707 334 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 MAP4P27816 1152 aaKnown RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 AKT1P31749 480 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 ARCN1P48444 511 aaKnown RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 CDKN1CP49918 316 aaPredicted RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 GEMP55040 296 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 EIF3EP60228 445 aaKnown RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 COPS2P61201 443 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 TMPRSS15P98073 1019 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 ABHD18Q0P651 414 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 ITGA9Q13797 1035 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 TAF1AQ15573 450 aaPredicted RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 CCDC181Q5TID7 509 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 CACHD1Q5VU97 1274 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 GAS2L3Q86XJ1 694 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 CDKL3Q8IVW4 592 aaPredicted RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 KLHDC8BQ8IXV7 354 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 GALNT6Q8NCL4 622 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 ZNF398Q8TD17 642 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 KLHL6Q8WZ60 621 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 MRFAP1L1Q96HT8 127 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 SPATA13Q96N96 652 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 TTC25Q96NG3 672 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 RUFY1Q96T51 708 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 ZPBPQ9BS86 351 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 ANP32EQ9BTT0 268 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 WWP1Q9H0M0 922 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 FAM96AQ9H5X1 160 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 AKIRIN1Q9H9L7 192 aaPredicted RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 IMP3Q9NV31 184 aaKnown RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 GEMIN8Q9NWZ8 242 aaKnown RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 EPHA6Q9UF33 1036 aa11.39□□□□□ -0.59
VTI1A-208ENST00000494728 R3HDM2Q9Y2K5 976 aaKnown RBP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.39□□□□□ -0.59
VTI1A-208ENST00000494728 SPTBN1Q01082 2364 aaKnown RBP11.38□□□□□ -0.59
VTI1A-208ENST00000494728 TCRBV7S2A1N4TA0A589 114 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 CYSRT1A8MQ03 144 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 ZNF891A8MT65 544 aaPredicted RBP11.38□□□□□ -0.59
VTI1A-208ENST00000494728 AGAP14A8MT82 685 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 TOX3O15405 576 aaPredicted RBP11.38□□□□□ -0.59
VTI1A-208ENST00000494728 LDB2O43679 373 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 ANXA9O76027 345 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 KIAA0754O94854 1291 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 METTL18O95568 372 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 EBLN1P0CF75 366 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 FOLR1P15328 257 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 VCLP18206 1134 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 NELFEP18615 380 aaKnown RBP11.38□□□□□ -0.59
VTI1A-208ENST00000494728 LPOP22079 712 aaPredicted RBP11.38□□□□□ -0.59
VTI1A-208ENST00000494728 HALP42357 657 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 VAV2P52735 878 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 GDF10P55107 478 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 KCNAB2Q13303 367 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 ZNF658BQ4V348 819 aaPredicted RBP11.38□□□□□ -0.59
VTI1A-208ENST00000494728 COLEC12Q5KU26 742 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 ZDHHC20Q5W0Z9 365 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 METRNLQ641Q3 311 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 ITPRIPL1Q6GPH6 555 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 FBXO38Q6PIJ6 1188 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 TMEM135Q86UB9 458 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 PTRH1Q86Y79 214 aaKnown RBP11.38□□□□□ -0.59
VTI1A-208ENST00000494728 BRSK1Q8TDC3 778 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 DNAJC1Q96KC8 554 aaKnown RBP11.38□□□□□ -0.59
VTI1A-208ENST00000494728 MAP3K3Q99759 626 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 DESI2Q9BSY9 194 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 FAM117AQ9C073 453 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 ZCCHC2Q9C0B9 1178 aaKnown RBP11.38□□□□□ -0.59
VTI1A-208ENST00000494728 RAB33BQ9H082 229 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 SLC25A18Q9H1K4 315 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 ASB8Q9H765 288 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 PIH1D1Q9NWS0 290 aaKnown RBP11.38□□□□□ -0.59
VTI1A-208ENST00000494728 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP11.38□□□□□ -0.59
VTI1A-208ENST00000494728 SEMA5BQ9P283 1151 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 LNPEPQ9UIQ6 1025 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 CROTQ9UKG9 612 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 RPS6KL1Q9Y6S9 549 aa11.38□□□□□ -0.59
VTI1A-208ENST00000494728 CCDC66A2RUB6 948 aa11.37□□□□□ -0.59
VTI1A-208ENST00000494728 OR5K3A6NET4 321 aa11.37□□□□□ -0.59
VTI1A-208ENST00000494728 GOLGA6L3A6NEY3 463 aa11.37□□□□□ -0.59
VTI1A-208ENST00000494728 BTNL10A8MVZ5 291 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms