RNA–Protein interactions for RNA: ENST00000486941.1

SNRNP40-205, Transcript of small nuclear ribonucleoprotein U5 subunit 40, human

TSL 2

Gene SNRNP40, Length 743 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNRNP40-205	ENST00000486941	SNX25	Q9H3E2	840 aa		4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TMEM8A	Q9HCN3	771 aa		4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TRIM36	Q9NQ86	728 aa		4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SACM1L	Q9NTJ5	587 aa		4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PANK4	Q9NVE7	773 aa		4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	COMMD8	Q9NX08	183 aa		4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	IL37	Q9NZH6	218 aa		4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	FBXO2	Q9UK22	296 aa	Predicted RBP	4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	RALY	Q9UKM9	306 aa	Known RBP	4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CLIC4	Q9Y696	253 aa		4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PTPRB	P23467	1997 aa		4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PTPRJ	Q12913	1337 aa		4.14	□□□□□ -1.75
SNRNP40-205	ENST00000486941	DMXL2	Q8TDJ6	3036 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941		A0A0G2JK05	382 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TCRBV21S2A2	A0A5A6	115 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	FAM92A	A1XBS5	289 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TBC1D3B	A6NDS4	549 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MBD3L4	A6NDZ8	208 aa	Predicted RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MBD3L3	A6NE82	208 aa	Predicted RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941		A8MVJ9	347 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	EIF3D	O15371	548 aa	Known RBP eCLIP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	HOXC11	O43248	304 aa	Predicted RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CCP110	O43303	1012 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	COCH	O43405	550 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZNF217	O75362	1048 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PLAU	P00749	431 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZDHHC11B	P0C7U3	371 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	GABRG2	P18507	467 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TNNI1	P19237	187 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ATIC	P31939	592 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	HOXD13	P35453	343 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	IDUA	P35475	653 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	STAT6	P42226	847 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CPA2	P48052	419 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TUB	P50607	506 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ATXN3	P54252	364 aa	Predicted RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TNNC1	P63316	161 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	HSF1	Q00613	529 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	B4GALNT1	Q00973	533 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	KDSR	Q06136	332 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	GFPT1	Q06210	699 aa	Predicted RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZNF33A	Q06730	810 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PIN1	Q13526	163 aa	Predicted RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ARHGEF7	Q14155	803 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	KCNAB1	Q14722	419 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PSMD6	Q15008	389 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SLC39A14	Q15043	492 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SNRNP35	Q16560	246 aa	Known RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	INSC	Q1MX18	579 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	LYSMD4	Q5XG99	296 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CBWD2	Q8IUF1	395 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NUP93	Q8N1F7	819 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	HDDC3	Q8N4P3	179 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	FRMD1	Q8N878	549 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PNPLA1	Q8N8W4	532 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NOC3L	Q8WTT2	800 aa	Known RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	FBXO32	Q969P5	355 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NMD3	Q96D46	503 aa	Known RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZNF419	Q96HQ0	510 aa	Predicted RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MRPL45	Q9BRJ2	306 aa	Known RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	FGFBP2	Q9BYJ0	223 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PANK2	Q9BZ23	570 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CHST8	Q9H2A9	424 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TNMD	Q9H2S6	317 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SAP30L	Q9HAJ7	183 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	USP29	Q9HBJ7	922 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SPHK2	Q9NRA0	654 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TMEM30A	Q9NV96	361 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	BCCIP	Q9P287	314 aa	Known RBP eCLIP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	DEC1	Q9P2X7	70 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CHORDC1	Q9UHD1	332 aa	Predicted RBP	4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZNF180	Q9UJW8	692 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SLC27A6	Q9Y2P4	619 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NME7	Q9Y5B8	376 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	NUMA1	Q14980	2115 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SHROOM3	Q8TF72	1996 aa		4.13	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CKAP5	Q14008	2032 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	ZFHX4	Q86UP3	3567 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	IGLV5-39	A0A0G2JS06	123 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SPAAR	A0A1B0GVQ0	90 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941		A0A1W2PQF6	199 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SLC22A23	A1A5C7	686 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	VPS37C	A5D8V6	355 aa	Predicted RBP	4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941		A8MXQ7	604 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CLDN5	O00501	218 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	TGFB1I1	O43294	461 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	SLC28A2	O43868	658 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CACNG3	O60359	315 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	GJB3	O75712	270 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	PIAS2	O75928	621 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	DLAT	P10515	647 aa	Known RBP	4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	CD59	P13987	128 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	HOXB2	P14652	356 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	GALNS	P34059	522 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	COPA	P53621	1224 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	AP3M2	P53677	418 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	MYL6	P60660	151 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	RPS16	P62249	146 aa	Known RBP	4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	FMO1	Q01740	532 aa		4.12	□□□□□ -1.75
SNRNP40-205	ENST00000486941	RHD	Q02161	417 aa		4.12	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms