RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 NSUN4Q96CB9 384 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 FAM120BQ96EK7 910 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 C18orf12Q96KH6 178 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 TRIM51Q9BSJ1 452 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 SYT11Q9BT88 431 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 CCDC68Q9H2F9 335 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 KAT14Q9H8E8 782 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 SEBOXQ9HB31 216 aaPredicted RBP2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 HINT3Q9NQE9 182 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 RRP7BPQ9NSQ0 103 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 INTS10Q9NVR2 710 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 NSMCE4AQ9NXX6 385 aa2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 ADD3Q9UEY8 706 aaKnown RBP2.92□□□□□ -1.94
CCDC88A-212ENST00000474059 hCG_1807616A0A1W2PRN6 198 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 A8MU10 97 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 EIF3DO15371 548 aaKnown RBP eCLIP2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 DCXO43602 365 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 PI15O43692 258 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 NKX2-2O95096 273 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 IPO7O95373 1038 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 TPOP07202 933 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 CLTBP09497 229 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 ZNF182P17025 639 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 ACTN2P35609 894 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 PSMB10P40306 273 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 MLLT10P55197 1068 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 CSNK2A1P68400 391 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 PLIN5Q00G26 463 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 NAE1Q13564 534 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 ACVR2BQ13705 512 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 TUBB2AQ13885 445 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 IRF3Q14653 427 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 WTAPQ15007 396 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 MYLK3Q32MK0 819 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 USP41Q3LFD5 358 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 ADAMTSL4-AS1Q5T5F5 129 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 GKAP1Q5VSY0 366 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 ZNF774Q6NX45 483 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 DUS1LQ6P1R4 473 aaKnown RBP2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 CHST9Q7L1S5 443 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 ATG9AQ7Z3C6 839 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 SZRD1Q7Z422 152 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 CCDC13Q8IYE1 715 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 ADGRF2Q8IZF7 708 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 CCDC89Q8N998 374 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 DDHD1Q8NEL9 900 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 CSNK2A3Q8NEV1 391 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 THAP6Q8TBB0 222 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 ZKSCAN4Q969J2 545 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 SLC41A2Q96JW4 573 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 PPP1R13BQ96KQ4 1090 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 C1orf74Q96LT6 269 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 TMEM68Q96MH6 324 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 FAM110AQ9BQ89 295 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 TUBB2BQ9BVA1 445 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 SMARCAD1Q9H4L7 1026 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 SH2D4AQ9H788 454 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 RANGRFQ9HD47 186 aaPredicted RBP2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 ADPRHL2Q9NX46 363 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 MTMR6Q9Y217 621 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 RABGAP1Q9Y3P9 1069 aa2.91□□□□□ -1.94
CCDC88A-212ENST00000474059 MEIOCA2RUB1 952 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 A8MZ25 164 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 E9PQ18 207 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 HS3ST1O14792 307 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 RTL8CO15255 209 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 SPINT2O43291 252 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 FIBPO43427 364 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 SLC25A12O75746 678 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 TSPAN9O75954 239 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 NADKO95544 446 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 CENPBP07199 599 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 CSH1P0DML2 217 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 CSH2P0DML3 217 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 NR2F2P24468 414 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 ACSL1P33121 698 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 GALCP54803 685 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 CDH8P55286 799 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 TAS2R38P59533 333 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 CHAF1BQ13112 559 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 KCTD2Q14681 263 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 C6orf141Q5SZD1 244 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 FRG2Q64ET8 278 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 KIAA0930Q6ICG6 404 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 TMEM154Q6P9G4 183 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 METTL7BQ6UX53 244 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 GLDNQ6ZMI3 551 aaPredicted RBP2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 CLEC17AQ6ZS10 378 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 CACNA2D4Q7Z3S7 1137 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 SGCDQ92629 289 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 IGSF8Q969P0 613 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 HARBI1Q96MB7 349 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 TMEM47Q9BQJ4 181 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 NUDT16L1Q9BRJ7 211 aaKnown RBP2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 CENPOQ9BU64 300 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 CLIC5Q9NZA1 410 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 TP53TG3Q9ULZ0 132 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 PCDHGB4Q9UN71 923 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 CSAG2Q9Y5P2 127 aa2.9□□□□□ -1.95
CCDC88A-212ENST00000474059 A0A1W2PQ09 198 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms