RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 CCDC170Q8IYT3 715 aa23.95■■□□□ 1.42
PTCH1-210ENST00000468211 OR4K2Q8NGD2 314 aa23.95■■□□□ 1.42
PTCH1-210ENST00000468211 INSM2Q96T92 566 aaPredicted RBP23.95■■□□□ 1.42
PTCH1-210ENST00000468211 IMP3Q9NV31 184 aaKnown RBP23.95■■□□□ 1.42
PTCH1-210ENST00000468211 FKBPLQ9UIM3 349 aa23.95■■□□□ 1.42
PTCH1-210ENST00000468211 DUSP10Q9Y6W6 482 aa23.95■■□□□ 1.42
PTCH1-210ENST00000468211 FLNCQ14315 2725 aa23.95■■□□□ 1.42
PTCH1-210ENST00000468211 GOLGA6L3A6NEY3 463 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 CYSRT1A8MQ03 144 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 SGTAO43765 313 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 FURINP09958 794 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 MTHFD1P11586 935 aaKnown RBP23.94■■□□□ 1.42
PTCH1-210ENST00000468211 FOLR1P15328 257 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 LPOP22079 712 aaPredicted RBP23.94■■□□□ 1.42
PTCH1-210ENST00000468211 PSMB4P28070 264 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 AKT1P31749 480 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 CTNNA1P35221 906 aaKnown RBP23.94■■□□□ 1.42
PTCH1-210ENST00000468211 TLE1Q04724 770 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 MSLNQ13421 630 aaPredicted RBP23.94■■□□□ 1.42
PTCH1-210ENST00000468211 SPA17Q15506 151 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 TAF1AQ15573 450 aaPredicted RBP23.94■■□□□ 1.42
PTCH1-210ENST00000468211 AADACL2Q6P093 401 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 SPDYE1Q8NFV5 336 aaPredicted RBP23.94■■□□□ 1.42
PTCH1-210ENST00000468211 SLC41A2Q96JW4 573 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 MAP3K3Q99759 626 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 WWP1Q9H0M0 922 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 FAM8A1Q9UBU6 413 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 LNPEPQ9UIQ6 1025 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 PCDHA3Q9Y5H8 950 aa23.94■■□□□ 1.42
PTCH1-210ENST00000468211 SOWAHDA6NJG2 315 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 ANXA9O76027 345 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 MSH3P20585 1137 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 XIAPP98170 497 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 MC1RQ01726 317 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 CRTC2Q53ET0 693 aaPredicted RBP23.93■■□□□ 1.42
PTCH1-210ENST00000468211 ANKRD20A2Q5SQ80 823 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 CCDC181Q5TID7 509 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 ANKRD20A1Q5TYW2 823 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 ANKRD20A3Q5VUR7 823 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 C9orf43Q8TAL5 461 aaPredicted RBP23.93■■□□□ 1.42
PTCH1-210ENST00000468211 APOBEC4Q8WW27 367 aaKnown RBP23.93■■□□□ 1.42
PTCH1-210ENST00000468211 STAMBPL1Q96FJ0 436 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 ABHD17AQ96GS6 310 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 ASB8Q9H765 288 aa23.93■■□□□ 1.42
PTCH1-210ENST00000468211 SPTBP11277 2137 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 NBASA2RRP1 2371 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 MACROD2A1Z1Q3 448 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 MGAT4DA6NG13 374 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 PJA2O43164 708 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 SRP72O76094 671 aaKnown RBP23.92■■□□□ 1.42
PTCH1-210ENST00000468211 COPS2P61201 443 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 PLCL1Q15111 1095 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 LONRF2Q1L5Z9 754 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 LARP7Q4G0J3 582 aaKnown RBP eCLIP23.92■■□□□ 1.42
PTCH1-210ENST00000468211 ITPRIPL1Q6GPH6 555 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 TMEM135Q86UB9 458 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 PPP1R3BQ86XI6 285 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 LILRA3Q8N6C8 439 aaPredicted RBP23.92■■□□□ 1.42
PTCH1-210ENST00000468211 OR13C4Q8NGS5 318 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 CCDC110Q8TBZ0 833 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 OSBPL8Q9BZF1 889 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 EPN3Q9H201 632 aa23.92■■□□□ 1.42
PTCH1-210ENST00000468211 AKIRIN1Q9H9L7 192 aaPredicted RBP23.92■■□□□ 1.42
PTCH1-210ENST00000468211 REXO2Q9Y3B8 237 aaKnown RBP23.92■■□□□ 1.42
PTCH1-210ENST00000468211 PIKFYVEQ9Y2I7 2098 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 C2orf81A6NN90 581 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 KCNN4O15554 427 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 KATNA1O75449 491 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 EBLN1P0CF75 366 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 RBP3P10745 1247 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 CYLC1P35663 651 aaPredicted RBP23.91■■□□□ 1.42
PTCH1-210ENST00000468211 EIF3EP60228 445 aaKnown RBP23.91■■□□□ 1.42
PTCH1-210ENST00000468211 TUBB3Q13509 450 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 ERV3-1Q14264 604 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 COLEC12Q5KU26 742 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 DENND5AQ6IQ26 1287 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 PWWP2BQ6NUJ5 590 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 SIDT2Q8NBJ9 832 aaKnown RBP23.91■■□□□ 1.42
PTCH1-210ENST00000468211 OR2L2Q8NH16 312 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 UBXN4Q92575 508 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 ALG3Q92685 438 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 ZNF514Q96K75 400 aaPredicted RBP23.91■■□□□ 1.42
PTCH1-210ENST00000468211 C12orf66Q96MD2 445 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 FAM96AQ9H5X1 160 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 KCNMB2Q9Y691 235 aa23.91■■□□□ 1.42
PTCH1-210ENST00000468211 EPN1Q9Y6I3 576 aaPredicted RBP23.91■■□□□ 1.42
PTCH1-210ENST00000468211 COL12A1Q99715 3063 aa23.9■■□□□ 1.42
PTCH1-210ENST00000468211 PTPN13Q12923 2485 aa23.9■■□□□ 1.42
PTCH1-210ENST00000468211 OR5K3A6NET4 321 aa23.9■■□□□ 1.42
PTCH1-210ENST00000468211 C5orf60A6NFR6 353 aa23.9■■□□□ 1.42
PTCH1-210ENST00000468211 CCL22O00626 93 aa23.9■■□□□ 1.42
PTCH1-210ENST00000468211 PTPN7P35236 360 aa23.9■■□□□ 1.42
PTCH1-210ENST00000468211 TMPRSS15P98073 1019 aa23.9■■□□□ 1.42
PTCH1-210ENST00000468211 SPARCL1Q14515 664 aa23.9■■□□□ 1.42
PTCH1-210ENST00000468211 DARS2Q6PI48 645 aaKnown RBP23.9■■□□□ 1.42
PTCH1-210ENST00000468211 CDKL3Q8IVW4 592 aaPredicted RBP23.9■■□□□ 1.42
PTCH1-210ENST00000468211 CT55Q8WUE5 264 aa23.9■■□□□ 1.42
PTCH1-210ENST00000468211 RMDN2Q96LZ7 410 aa23.9■■□□□ 1.42
PTCH1-210ENST00000468211 PPM1MQ96MI6 270 aa23.9■■□□□ 1.42
PTCH1-210ENST00000468211 RUFY1Q96T51 708 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms