RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 LSM1O15116 133 aaKnown RBP12.53□□□□□ -0.4
SHMT1-205ENST00000395684 ATP6V1G1O75348 118 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 FUCA1P04066 466 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 ARL1P40616 181 aaPredicted RBP12.53□□□□□ -0.4
SHMT1-205ENST00000395684 PLA2G16P53816 162 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 PIGFQ07326 219 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 TAF10Q12962 218 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 FAM98BQ52LJ0 330 aaKnown RBP12.53□□□□□ -0.4
SHMT1-205ENST00000395684 SPRYD7Q5W111 196 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 SULT1C3Q6IMI6 304 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 ENPP6Q6UWR7 440 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 FBXO32Q969P5 355 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 BPIFA1Q9NP55 256 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 PFDN4Q9NQP4 134 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 SMPD4Q9NXE4 827 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 IL37Q9NZH6 218 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 FKBPLQ9UIM3 349 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 TRMT6Q9UJA5 497 aaKnown RBP12.53□□□□□ -0.4
SHMT1-205ENST00000395684 PSME2Q9UL46 239 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 COQ6Q9Y2Z9 468 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 TRPM7Q96QT4 1865 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 FUOMA2VDF0 154 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 GRXCR2A6NFK2 248 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 G3V2T6 193 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 K7EPI3 171 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 GPR39O43194 453 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 NOBOXO60393 691 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 DFNA5O60443 496 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 BCL10O95999 233 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 HTR1AP08908 422 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 OCM2P0CE71 109 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 OCMP0CE72 109 aaPredicted RBP12.53□□□□□ -0.4
SHMT1-205ENST00000395684 TACR2P21452 398 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 PAX3P23760 479 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 PIGAP37287 484 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 KCNQ1P51787 676 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 CHRNB3Q05901 458 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 BFSP2Q13515 415 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 PWP1Q13610 501 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 TUBA3CQ13748 450 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 MEP1AQ16819 746 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 IMPG1Q17R60 797 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 GALNT18Q6P9A2 607 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 ZDHHC13Q8IUH4 622 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 PDZD8Q8NEN9 1154 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 TRPV1Q8NER1 839 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 FIG4Q92562 907 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 FUBP3Q96I24 572 aaKnown RBP eCLIP12.53□□□□□ -0.4
SHMT1-205ENST00000395684 AMBRA1Q9C0C7 1298 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 GPN2Q9H9Y4 310 aaPredicted RBP12.53□□□□□ -0.4
SHMT1-205ENST00000395684 SARS2Q9NP81 518 aaKnown RBP12.53□□□□□ -0.4
SHMT1-205ENST00000395684 TMEM45AQ9NWC5 275 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 FAM118AQ9NWS6 357 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 SLC30A1Q9Y6M5 507 aa12.53□□□□□ -0.4
SHMT1-205ENST00000395684 FAM92AA1XBS5 289 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 C2orf81A6NN90 581 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 CNPP09543 421 aaKnown RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 TPP2P29144 1249 aaPredicted RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 MC4RP32245 332 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 PPP1R8Q12972 351 aaKnown RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 LAPTM5Q13571 262 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 ATP1A4Q13733 1029 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 ABRAXAS2Q15018 415 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 KIAA0040Q15053 153 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 AP5B1Q2VPB7 878 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 SLC44A4Q53GD3 710 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 PRR23BQ6ZRT6 265 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 ZNF598Q86UK7 904 aaKnown RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 C8orf59Q8N0T1 100 aaPredicted RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 LGI2Q8N0V4 545 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 NAT16Q8N8M0 369 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 FBXO30Q8TB52 745 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 RAB2BQ8WUD1 216 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 AURKBQ96GD4 344 aaPredicted RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 PSKH2Q96QS6 385 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 MBOAT4Q96T53 435 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 IKZF5Q9H5V7 419 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 CCSER2Q9H7U1 834 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 HPS4Q9NQG7 708 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 COMMD8Q9NX08 183 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 TSR3Q9UJK0 312 aaKnown RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 POLR3HQ9Y535 204 aaPredicted RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 PCDHGC4Q9Y5F7 938 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 C1orf232A0A0U1RR37 186 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 OR7A17O14581 309 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 KATNA1O75449 491 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 AKR1A1P14550 325 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 PORP16435 677 aaPredicted RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 NR4A1P22736 598 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 GSTM2P28161 218 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 RAB15P59190 212 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 RELAQ04206 551 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 CBX3Q13185 183 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 NR6A1Q15406 480 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 NFE2Q16621 373 aaPredicted RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 DPY19L1Q2PZI1 675 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 CTU2Q2VPK5 515 aaKnown RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 RBM48Q5RL73 367 aaKnown RBP12.52□□□□□ -0.41
SHMT1-205ENST00000395684 LAIR2Q6ISS4 152 aa12.52□□□□□ -0.41
SHMT1-205ENST00000395684 RBM23Q86U06 439 aaKnown RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 277.3 ms