RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 MAD1L1Q9Y6D9 718 aa21.29■■□□□ 1
CLN3-207ENST00000395653 IGHV1OR21-1A0A087WYE8 117 aa21.28■■□□□ 1
CLN3-207ENST00000395653 OR52A4PA6NMU1 304 aa21.28■■□□□ 1
CLN3-207ENST00000395653 URI1O94763 535 aaPredicted RBP21.28■■□□□ 1
CLN3-207ENST00000395653 USP1O94782 785 aa21.28■■□□□ 1
CLN3-207ENST00000395653 CPNE6O95741 557 aa21.28■■□□□ 1
CLN3-207ENST00000395653 FTH1P02794 183 aa21.28■■□□□ 1
CLN3-207ENST00000395653 EPHA4P54764 986 aa21.28■■□□□ 1
CLN3-207ENST00000395653 SQSTM1Q13501 440 aa21.28■■□□□ 1
CLN3-207ENST00000395653 DNAJC21Q5F1R6 531 aaKnown RBP21.28■■□□□ 1
CLN3-207ENST00000395653 MRNIPQ6NTE8 343 aa21.28■■□□□ 1
CLN3-207ENST00000395653 UNQ6494/PRO21346Q6UXR6 183 aa21.28■■□□□ 1
CLN3-207ENST00000395653 ZNF761Q86XN6 746 aaPredicted RBP21.28■■□□□ 1
CLN3-207ENST00000395653 GPR150Q8NGU9 434 aa21.28■■□□□ 1
CLN3-207ENST00000395653 STAMBPL1Q96FJ0 436 aa21.28■■□□□ 1
CLN3-207ENST00000395653 FCRL3Q96P31 734 aaPredicted RBP21.28■■□□□ 1
CLN3-207ENST00000395653 TRIM56Q9BRZ2 755 aaKnown RBP21.28■■□□□ 1
CLN3-207ENST00000395653 TRIM31Q9BZY9 425 aa21.28■■□□□ 1
CLN3-207ENST00000395653 FAM8A1Q9UBU6 413 aa21.28■■□□□ 1
CLN3-207ENST00000395653 PSMD13Q9UNM6 376 aa21.28■■□□□ 1
CLN3-207ENST00000395653 PCDHB1Q9Y5F3 818 aa21.28■■□□□ 1
CLN3-207ENST00000395653 ENTPD2Q9Y5L3 495 aa21.28■■□□□ 1
CLN3-207ENST00000395653 ASPMQ8IZT6 3477 aa21.28■■□□□ 1
CLN3-207ENST00000395653 ZCWPW2A0A1B0GU75 182 aa21.27■■□□□ 1
CLN3-207ENST00000395653 LILRA5A6NI73 299 aa21.27■■□□□ 1
CLN3-207ENST00000395653 RAD51CO43502 376 aa21.27■■□□□ 1
CLN3-207ENST00000395653 SLC35G4P0C7Q5 338 aa21.27■■□□□ 1
CLN3-207ENST00000395653 CD1CP29017 333 aa21.27■■□□□ 1
CLN3-207ENST00000395653 ITGA8P53708 1063 aa21.27■■□□□ 1
CLN3-207ENST00000395653 RPA4Q13156 261 aa21.27■■□□□ 1
CLN3-207ENST00000395653 WHAMMP3Q1A5X7 153 aa21.27■■□□□ 1
CLN3-207ENST00000395653 TYSND1Q2T9J0 566 aa21.27■■□□□ 1
CLN3-207ENST00000395653 AMZ1Q400G9 498 aa21.27■■□□□ 1
CLN3-207ENST00000395653 SDCCAG8Q86SQ7 713 aaPredicted RBP21.27■■□□□ 1
CLN3-207ENST00000395653 LDB1Q86U70 411 aaPredicted RBP21.27■■□□□ 1
CLN3-207ENST00000395653 PDIK1LQ8N165 341 aa21.27■■□□□ 1
CLN3-207ENST00000395653 BBOF1Q8ND07 529 aa21.27■■□□□ 1
CLN3-207ENST00000395653 ZNF592Q92610 1267 aa21.27■■□□□ 1
CLN3-207ENST00000395653 CXorf40BQ96DE9 158 aa21.27■■□□□ 1
CLN3-207ENST00000395653 ERP44Q9BS26 406 aa21.27■■□□□ 1
CLN3-207ENST00000395653 NRSN2Q9GZP1 204 aa21.27■■□□□ 1
CLN3-207ENST00000395653 ATXN7L1Q9ULK2 861 aaPredicted RBP21.27■■□□□ 1
CLN3-207ENST00000395653 KNTC1P50748 2209 aa21.27■■□□□ 1
CLN3-207ENST00000395653 TRABD2BA6NFA1 517 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 PRMT5O14744 637 aaPredicted RBP21.26■□□□□ 0.99
CLN3-207ENST00000395653 TP73O15350 636 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 POLBP06746 335 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 PGAM1P18669 254 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 OGNP20774 298 aaKnown RBP21.26■□□□□ 0.99
CLN3-207ENST00000395653 RPL21P46778 160 aaKnown RBP21.26■□□□□ 0.99
CLN3-207ENST00000395653 DHX9Q08211 1270 aaKnown RBP21.26■□□□□ 0.99
CLN3-207ENST00000395653 RPE65Q16518 533 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 MAP9Q49MG5 647 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 RNF187Q5TA31 235 aaPredicted RBP21.26■□□□□ 0.99
CLN3-207ENST00000395653 TMEM26Q6ZUK4 368 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 LRRC6Q86X45 466 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 LILRA3Q8N6C8 439 aaPredicted RBP21.26■□□□□ 0.99
CLN3-207ENST00000395653 OTUD6BQ8N6M0 293 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 OR10G6Q8NH81 332 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 TMEM74Q96NL1 305 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 TCF12Q99081 682 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 DPYSL5Q9BPU6 564 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 NAT9Q9BTE0 207 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 WWP1Q9H0M0 922 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 EPB41L1Q9H4G0 881 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 SLC40A1Q9NP59 571 aa21.26■□□□□ 0.99
CLN3-207ENST00000395653 ACACBO00763 2458 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 C1QTNF9BB2RNN3 333 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 GOLGA8KD6RF30 607 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 GOLGA8TH3BQL2 631 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 TMX2-CTNND1H3BSU7 103 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 LIN7AO14910 233 aaPredicted RBP21.25■□□□□ 0.99
CLN3-207ENST00000395653 PFDN6O15212 129 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 DUX1O43812 170 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 NDUFS3O75489 264 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 C1QTNF9P0C862 333 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 CCKBRP32239 447 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 INHBCP55103 352 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 MSS51Q4VC12 460 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 NEPROQ6NW34 567 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 ZNF449Q6P9G9 518 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 PIM3Q86V86 326 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 NXPE2Q96DL1 559 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 INSM2Q96T92 566 aaPredicted RBP21.25■□□□□ 0.99
CLN3-207ENST00000395653 EBNA1BP2Q99848 306 aaKnown RBP21.25■□□□□ 0.99
CLN3-207ENST00000395653 TSSK1BQ9BXA7 367 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 RDH14Q9HBH5 336 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 SNX24Q9Y343 169 aa21.25■□□□□ 0.99
CLN3-207ENST00000395653 TTC4O95801 387 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 MTHFD1P11586 935 aaKnown RBP21.24■□□□□ 0.99
CLN3-207ENST00000395653 RPS3P23396 243 aaKnown RBP eCLIP21.24■□□□□ 0.994e-6■■□□□ 12.9
CLN3-207ENST00000395653 MRPS25P82663 173 aaKnown RBP21.24■□□□□ 0.99
CLN3-207ENST00000395653 ZFP36L1Q07352 338 aaKnown RBP21.24■□□□□ 0.99
CLN3-207ENST00000395653 TUBB2AQ13885 445 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 RTP5Q14D33 572 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 HIF1AQ16665 826 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 BBS9Q3SYG4 887 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 NKAIN2Q5VXU1 208 aa21.24■□□□□ 0.99
CLN3-207ENST00000395653 CAPRIN2Q6IMN6 1127 aaKnown RBP21.24■□□□□ 0.99
CLN3-207ENST00000395653 USP53Q70EK8 1073 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms