RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 MPIP34949 423 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PTGS2P35354 604 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PSMD8P48556 350 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TUSC3Q13454 348 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ODF4Q2M2E3 257 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 CCNJQ5T5M9 372 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ZC3H14Q6PJT7 736 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 C19orf35Q6ZS72 473 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF720Q7Z2F6 126 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PIGWQ7Z7B1 504 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 C12orf40Q86WS4 652 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 DHX40Q8IX18 779 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 FBXO39Q8N4B4 442 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ZMIZ2Q8NF64 920 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 GLYATL2Q8WU03 294 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 CAVIN3Q969G5 261 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TDRD3Q9H7E2 651 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TNFRSF19Q9NS68 423 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF536O15090 1300 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 RTTNQ86VV8 2226 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 A0A087X0B3 334 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 LOC102723532A0A0G2JNH3 316 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 IMPA2O14732 288 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 AXIN1O15169 862 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PRKAB2O43741 272 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PLAUP00749 431 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 SCGB1A1P11684 91 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PRAMEF18Q5VWM3 479 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 KCNV1Q6PIU1 500 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 FAM131AQ6UXB0 335 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 DPY19L3Q6ZPD9 716 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TCAIMQ8N3R3 496 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 OR13C9Q8NGT0 318 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 OR6Y1Q8NGX8 325 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ZKSCAN4Q969J2 545 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PNPLA2Q96AD5 504 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PRR11Q96HE9 360 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 SH2D3AQ9BRG2 576 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 BDH2Q9BUT1 245 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 CCDC106Q9BWC9 280 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 EIF5A2Q9GZV4 153 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TRABDQ9H4I3 376 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 FN3KRPQ9HA64 309 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TMEM27Q9HBJ8 222 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ASAH2Q9NR71 780 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ABHD10Q9NUJ1 306 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TESQ9UGI8 421 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ADAMTS1Q9UHI8 967 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TPST2O60704 377 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PRLP01236 227 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 APODP05090 189 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TSHRP16473 764 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 CDC25CP30307 473 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 GJA5P36382 358 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 CDH4P55283 916 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 AP3S2P59780 193 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PTENP60484 403 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 UBE2NP61088 152 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 GCKRQ14397 625 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 MBTPS1Q14703 1052 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 CBX2Q14781 532 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 RFPL4BQ6ZWI9 263 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PLPP6Q8IY26 295 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 MAML2Q8IZL2 1156 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 OR4A15Q8NGL6 344 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 MAP3K3Q99759 626 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 TBL1XR1Q9BZK7 514 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 KAT8Q9H7Z6 458 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 RBM12Q9NTZ6 932 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 BLOC1S4Q9NUP1 217 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 KANTRA0A1W2PQU2 76 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 EFCAB7A8K855 629 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 MATN2O00339 956 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 SLC1A7O00341 560 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 SLC9A3R1O14745 358 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PCCAP05165 728 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 INSRP06213 1382 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 SCGB1C2P0DMR2 95 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 EPCAMP16422 314 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF14P17017 642 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 S100A7P31151 101 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 CDKN1CP49918 316 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 UBE2G2P60604 165 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 RPL6Q02878 288 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 RBPJQ06330 500 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 IKBKEQ14164 716 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 POU6F1Q14863 301 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 MTF1Q14872 753 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 CRY1Q16526 586 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 PARP6Q2NL67 630 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 FAM153CQ494X1 144 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 UBAP2Q5T6F2 1119 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 RPRD2Q5VT52 1461 aaKnown RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 NAIF1Q69YI7 327 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 C6orf89Q6UWU4 347 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 OLFML1Q6UWY5 402 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 IL20RBQ6UXL0 311 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 ZNF782Q6ZMW2 699 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-202ENST00000375405 LPCAT2Q7L5N7 544 aa4.59□□□□□ -1.67
SCN1A-202ENST00000375405 LAPTM4BQ86VI4 370 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms