RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 ZCCHC11Q5TAX3 1644 aaKnown RBP8.64□□□□□ -1.03
NIPBL-201ENST00000282516 DAPL1A0PJW8 107 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 SLC22A1O15245 554 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 SLC35G6P0C7Q6 338 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 HSD11B1P28845 292 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 PRDX6P30041 224 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 RAB39AQ14964 217 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 SF1Q15637 639 aaKnown RBP8.64□□□□□ -1.03
NIPBL-201ENST00000282516 PLEKHG4Q58EX7 1191 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 SNAP47Q5SQN1 464 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 DNM1P34Q6PK57 102 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 KLHL36Q8N4N3 616 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 DNAJB3Q8WWF6 145 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 XAGE5Q8WWM1 108 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 C12orf43Q96C57 262 aaKnown RBP8.64□□□□□ -1.03
NIPBL-201ENST00000282516 RBM18Q96H35 190 aaKnown RBP8.64□□□□□ -1.03
NIPBL-201ENST00000282516 NPAS2Q99743 824 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 ACAT2Q9BWD1 397 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 ZDHHC4Q9NPG8 344 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 MIOSQ9NXC5 875 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 CDH22Q9UJ99 828 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 CHD1O14646 1710 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 CABYRO75952 493 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 CASRP41180 1078 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 CDH12P55289 794 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 ST3GAL4Q11206 333 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 FAM183BPQ6ZVS7 135 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 NIPA1Q7RTP0 329 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 GALNT13Q8IUC8 556 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 SAMD14Q8IZD0 417 aaPredicted RBP8.64□□□□□ -1.03
NIPBL-201ENST00000282516 ZNF527Q8NB42 609 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 EHD4Q9H223 541 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 TMEM165Q9HC07 324 aa8.64□□□□□ -1.03
NIPBL-201ENST00000282516 DNAJC13O75165 2243 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 FAM205AQ6ZU69 1335 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 H7C2Y5 167 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 MAGEA6P43360 314 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 RPL6Q02878 288 aaKnown RBP8.63□□□□□ -1.03
NIPBL-201ENST00000282516 ADAM15Q13444 863 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 PGM5Q15124 567 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 PM20D2Q8IYS1 436 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 CAMK1GQ96NX5 476 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.63□□□□□ -1.031e-12■■■■■ 52.9
NIPBL-201ENST00000282516 TBCCD1Q9NVR7 557 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 THUMPD1Q9NXG2 353 aaKnown RBP8.63□□□□□ -1.03
NIPBL-201ENST00000282516 PTTG2Q9NZH5 202 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 ARHGAP20Q9P2F6 1191 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 FARSAQ9Y285 508 aaKnown RBP8.63□□□□□ -1.03
NIPBL-201ENST00000282516 RPH3AQ9Y2J0 694 aaPredicted RBP8.63□□□□□ -1.03
NIPBL-201ENST00000282516 IFT52Q9Y366 437 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 A0A1B0GVM2 712 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 TCAF2A6NFQ2 919 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 HSBP1L1C9JCN9 74 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 RP2O75695 350 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 NELFEP18615 380 aaKnown RBP8.63□□□□□ -1.03
NIPBL-201ENST00000282516 MAGP20916 626 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 ZBTB46Q86UZ6 589 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 COX18Q8N8Q8 333 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 ZSCAN4Q8NAM6 433 aaPredicted RBP8.63□□□□□ -1.03
NIPBL-201ENST00000282516 BORCS8Q96FH0 119 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 PCDHB1Q9Y5F3 818 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 U3KQV3 271 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 B3GALT2O43825 422 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 STK16O75716 305 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 ITPKAP23677 461 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 CAPZA1P52907 286 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 HERV-K104P61576 105 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 DUPD1Q68J44 220 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 KCTD4Q8WVF5 259 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 NECAB3Q96P71 396 aaPredicted RBP8.63□□□□□ -1.03
NIPBL-201ENST00000282516 FTHL17Q9BXU8 183 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 TIMM8BQ9Y5J9 83 aaPredicted RBP8.63□□□□□ -1.03
NIPBL-201ENST00000282516 CDH13P55290 713 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 CACNG1Q06432 222 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 HERC3Q15034 1050 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 WSCD2Q2TBF2 565 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 LDLRAP1Q5SW96 308 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 COMTD1Q86VU5 262 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 OR52J3Q8NH60 311 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 EXOSC8Q96B26 276 aaKnown RBP8.63□□□□□ -1.03
NIPBL-201ENST00000282516 GAL3ST4Q96RP7 486 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 SLC5A7Q9GZV3 580 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 PDE10AQ9Y233 779 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 A0A0G2JLW4 131 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 CLDN9O95484 217 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 ATP5A1P25705 553 aaKnown RBP8.63□□□□□ -1.03
NIPBL-201ENST00000282516 MC4RP32245 332 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 UGT1A3P35503 534 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 GLP1RP43220 463 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 ARFRP1Q13795 201 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 FBXO43Q4G163 708 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 FBXO33Q7Z6M2 555 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 LHFPL3Q86UP9 236 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 BRSK1Q8TDC3 778 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 IPO13O94829 963 aaKnown RBP8.63□□□□□ -1.03
NIPBL-201ENST00000282516 COL6A1P12109 1028 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 AVPR1BP47901 424 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 IQCCQ4KMZ1 466 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 GK5Q6ZS86 529 aa8.63□□□□□ -1.03
NIPBL-201ENST00000282516 CPA6Q8N4T0 437 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms