RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 GSTM4Q03013 218 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 SEPT7Q16181 437 aaKnown RBP14.76□□□□□ -0.05
UPF1-202ENST00000594243 DBN1Q16643 649 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 CLPPQ16740 277 aaPredicted RBP14.76□□□□□ -0.05
UPF1-202ENST00000594243 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.76□□□□□ -0.05
UPF1-202ENST00000594243 RNASEH2BQ5TBB1 312 aaKnown RBP14.76□□□□□ -0.05
UPF1-202ENST00000594243 METRNLQ641Q3 311 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 CASC4Q6P4E1 433 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 HOOK3Q86VS8 718 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 JAMLQ86YT9 394 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 SPATA4Q8NEY3 305 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 C16orf45Q96MC5 204 aaPredicted RBP14.76□□□□□ -0.05
UPF1-202ENST00000594243 CATSPERZQ9NTU4 200 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 KCNK4Q9NYG8 393 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 CPNE7Q9UBL6 633 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 ACSL5Q9ULC5 683 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 USP24Q9UPU5 2620 aa14.76□□□□□ -0.05
UPF1-202ENST00000594243 A0A1W2PQM1 296 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 TMX2-CTNND1H3BSU7 103 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 CD3EAPO15446 510 aaKnown RBP14.75□□□□□ -0.05
UPF1-202ENST00000594243 TTI1O43156 1089 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 SGTAO43765 313 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 CSO75390 466 aaKnown RBP14.75□□□□□ -0.05
UPF1-202ENST00000594243 VIPP01282 170 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 OR56A5P0C7T3 313 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 PBLDP30039 288 aaPredicted RBP14.75□□□□□ -0.05
UPF1-202ENST00000594243 TTPAP49638 278 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 DRG2P55039 364 aaKnown RBP14.75□□□□□ -0.05
UPF1-202ENST00000594243 OR1D5P58170 312 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 GPLD1P80108 840 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 CAMK2BQ13554 666 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 NFE2L1Q14494 772 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 ISXQ2M1V0 245 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 IZUMO3Q5VZ72 239 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 ZNF449Q6P9G9 518 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 PACS1Q6VY07 963 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 MAATS1Q7Z4T9 603 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 PIM3Q86V86 326 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 MARCH9Q86YJ5 346 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 TRIM48Q8IWZ4 208 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 CFAP206Q8IYR0 622 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 GATA6Q92908 595 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 MFSD3Q96ES6 412 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 AHCYL2Q96HN2 611 aaKnown RBP14.75□□□□□ -0.05
UPF1-202ENST00000594243 KRT12Q99456 494 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 CCM2Q9BSQ5 444 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 NRSN2Q9GZP1 204 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 POT1Q9NUX5 634 aa14.75□□□□□ -0.05
UPF1-202ENST00000594243 MYLKQ15746 1914 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 PLXNB3Q9ULL4 1909 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 FAM237BA0A1B0GVD1 139 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 TRABD2BA6NFA1 517 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 NDC80O14777 642 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 PFDN6O15212 129 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 VAPBO95292 243 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 CPNE6O95741 557 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 BRAFP15056 766 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 IVDP26440 423 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 SLC19A1P41440 591 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 MAGEA3P43357 314 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 SQSTM1Q13501 440 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 AMZ1Q400G9 498 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 CES3Q6UWW8 571 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 UNQ6494/PRO21346Q6UXR6 183 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 FAM83HQ6ZRV2 1179 aaPredicted RBP14.74□□□□□ -0.05
UPF1-202ENST00000594243 SDCCAG8Q86SQ7 713 aaPredicted RBP14.74□□□□□ -0.05
UPF1-202ENST00000594243 RBM12BQ8IXT5 1001 aaKnown RBP14.74□□□□□ -0.05
UPF1-202ENST00000594243 MPP5Q8N3R9 675 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 CLDN19Q8N6F1 224 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 OR10G6Q8NH81 332 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 HM13Q8TCT9 377 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 CXorf40BQ96DE9 158 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 TMEM74Q96NL1 305 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 DPYSL5Q9BPU6 564 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 UCK1Q9HA47 277 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 SCHIP1Q9P0W5 487 aaPredicted RBP14.74□□□□□ -0.05
UPF1-202ENST00000594243 ZNF624Q9P2J8 865 aaPredicted RBP14.74□□□□□ -0.05
UPF1-202ENST00000594243 PTPRBP23467 1997 aa14.74□□□□□ -0.05
UPF1-202ENST00000594243 IGHV1OR21-1A0A087WYE8 117 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 TMEM8BA6NDV4 472 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 FAM187AA6NFU0 413 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 C1QTNF9BB2RNN3 333 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 D6RAR5 112 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 KIF2AO00139 706 aaPredicted RBP14.73□□□□□ -0.05
UPF1-202ENST00000594243 FTH1P02794 183 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 C1QTNF9P0C862 333 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 CD1CP29017 333 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 PPM1FP49593 454 aaPredicted RBP14.73□□□□□ -0.05
UPF1-202ENST00000594243 EPHA4P54764 986 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 UBE2IP63279 158 aaKnown RBP14.73□□□□□ -0.05
UPF1-202ENST00000594243 CLCA4Q14CN2 919 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 MORF4L2Q15014 288 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 ANKRD20A4Q4UJ75 823 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 KIAA0930Q6ICG6 404 aaPredicted RBP14.73□□□□□ -0.05
UPF1-202ENST00000594243 MRNIPQ6NTE8 343 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 MICALCLQ6ZW33 695 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 TMEM135Q86UB9 458 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 BBOF1Q8ND07 529 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 NAT14Q8WUY8 206 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 CCDC97Q96F63 343 aaPredicted RBP14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms