RNA–Protein interactions for RNA: ENST00000584063.5

CDK5RAP3-231, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 1 (best)

Gene CDK5RAP3, Length 2,759 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-231	ENST00000584063	HMGCLL1	Q8TB92	370 aa		11.5	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	ERLEC1	Q96DZ1	483 aa		11.5	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	KLHL5	Q96PQ7	755 aa		11.5	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PITHD1	Q9GZP4	211 aa	Predicted RBP	11.5	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	FAM124B	Q9H5Z6	455 aa	Predicted RBP	11.5	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	C12orf10	Q9HB07	376 aa		11.5	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	ZBTB26	Q9HCK0	441 aa		11.5	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	TRHDE	Q9UKU6	1024 aa		11.5	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	GPR52	Q9Y2T5	361 aa		11.5	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PDCD11	Q14690	1871 aa	Known RBP	11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	TYW5	A2RUC4	315 aa	Known RBP	11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	RAD51B	O15315	384 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	NIPSNAP2	O75323	286 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	ABCB1	P08183	1280 aa	Predicted RBP	11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PSMC3	P17980	439 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	CAPRIN1	Q14444	709 aa	Known RBP	11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	IHH	Q14623	411 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	TCTN1	Q2MV58	587 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PLA2G4E	Q3MJ16	856 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	TRIM60	Q495X7	471 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	INTS6L	Q5JSJ4	861 aa	Known RBP	11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	RAB41	Q5JT25	222 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	CD300LG	Q6UXG3	332 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	MARVELD2	Q8N4S9	558 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	TTC9B	Q8N6N2	239 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	MED30	Q96HR3	178 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	NSMCE3	Q96MG7	304 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	ACBD6	Q9BR61	282 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	NAT9	Q9BTE0	207 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	NMUR1	Q9HB89	426 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	ARHGEF37	A1IGU5	675 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	SDHD	O14521	159 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	MPO	P05164	745 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	HLA-DQB2	P05538	268 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	CPB1	P15086	417 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	HTR2B	P41595	481 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	ITK	Q08881	620 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	GPNMB	Q14956	572 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	DENND5A	Q6IQ26	1287 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	KRT80	Q6KB66	452 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	DUS1L	Q6P1R4	473 aa	Known RBP	11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PIM3	Q86V86	326 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	TMEM173	Q86WV6	379 aa	Predicted RBP	11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	HERC6	Q8IVU3	1022 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	TMEM102	Q8N9M5	508 aa	Predicted RBP	11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	GPR62	Q9BZJ7	368 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	OSER1	Q9NX31	292 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	OBP2A	Q9NY56	170 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	IL37	Q9NZH6	218 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	AP4S1	Q9Y587	144 aa		11.49	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	CHD7	Q9P2D1	2997 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	FBP2	O00757	339 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	ACOT8	O14734	319 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PAGE1	O75459	146 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	GPC4	O75487	556 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PIAS2	O75928	621 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	HSMCR30	P0CW71	290 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	STMN1	P16949	149 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	GRIA3	P42263	894 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	NDST2	P52849	883 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PRKAA1	Q13131	559 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	CTXN3	Q4LDR2	81 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PRRC2B	Q5JSZ5	2229 aa	Known RBP	11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	CIR1	Q86X95	450 aa	Predicted RBP	11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PGAM4	Q8N0Y7	254 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	NAT16	Q8N8M0	369 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	TTL	Q8NG68	377 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	SEPT8	Q92599	483 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	NTAN1	Q96AB6	310 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	BTBD9	Q96Q07	612 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	THSD7B	Q9C0I4	1608 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	LMAN2L	Q9H0V9	348 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063		Q9H521	79 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	OLA1	Q9NTK5	396 aa	Known RBP	11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	GPRC5B	Q9NZH0	403 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	IFT80	Q9P2H3	777 aa	Predicted RBP	11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	FNDC3A	Q9Y2H6	1198 aa	Known RBP	11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	CRYL1	Q9Y2S2	319 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PCDHGA7	Q9Y5G6	932 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	TMEM114	B3SHH9	223 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063		B9A039	149 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	DENR	O43583	198 aa	Known RBP	11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	TNFAIP8	O95379	198 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PIRT	P0C851	137 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	POR	P16435	677 aa	Predicted RBP	11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	KCNC1	P48547	511 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	SLC7A2	P52569	658 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	GPR85	P60893	370 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	SLC12A1	Q13621	1099 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	FASTK	Q14296	549 aa	Known RBP	11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	BEND4	Q6ZU67	534 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	FAM47B	Q8NA70	645 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	TSPAN14	Q8NG11	270 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	RIN3	Q8TB24	985 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	PHOSPHO2	Q8TCD6	241 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	CANT1	Q8WVQ1	401 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	GPR22	Q99680	433 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	SEPT5	Q99719	369 aa	Predicted RBP	11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	OLFM1	Q99784	485 aa		11.48	□□□□□ -0.57
CDK5RAP3-231	ENST00000584063	MCMBP	Q9BTE3	642 aa		11.48	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 27 ms