RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 DNAJC3Q13217 504 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 DBN1Q16643 649 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 KBTBD12Q3ZCT8 623 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 HSP90B2PQ58FF3 399 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 CEP85LQ5SZL2 805 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 ZNF648Q5T619 568 aaPredicted RBP15.3■□□□□ 0.04
SS18-216ENST00000580751 TAOK1Q7L7X3 1001 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 KANSL1Q7Z3B3 1105 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 LRRTM4Q86VH4 590 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 GKN2Q86XP6 184 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 GATAD2AQ86YP4 633 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 TRAPPC5Q8IUR0 188 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 OTUD6BQ8N6M0 293 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 GPR150Q8NGU9 434 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 CPNE1Q99829 537 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 GSDMCQ9BYG8 508 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 TMEM168Q9H0V1 697 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 C20orf96Q9NUD7 363 aaPredicted RBP15.3■□□□□ 0.04
SS18-216ENST00000580751 UCKL1Q9NWZ5 548 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 ZFATQ9P243 1243 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 ZNHIT2Q9UHR6 403 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 CDV3Q9UKY7 258 aaKnown RBP15.3■□□□□ 0.04
SS18-216ENST00000580751 GPSM3Q9Y4H4 160 aa15.3■□□□□ 0.04
SS18-216ENST00000580751 TDRD6O60522 2096 aaKnown RBP15.29■□□□□ 0.04
SS18-216ENST00000580751 DNAH14Q0VDD8 3507 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 LMO7DNF2Z398 122 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 SCAMP1O15126 338 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 PFDN6O15212 129 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 KMOO15229 486 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 FUCA1P04066 466 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 ANXA6P08133 673 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 INHBAP08476 426 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 PRSS56P0CW18 603 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 CD59P13987 128 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 NSG1P42857 185 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 THOC5Q13769 683 aaKnown RBP15.29■□□□□ 0.04
SS18-216ENST00000580751 KRT71Q3SY84 523 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 RNF187Q5TA31 235 aaPredicted RBP15.29■□□□□ 0.04
SS18-216ENST00000580751 NEPROQ6NW34 567 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 TRMT10BQ6PF06 316 aaKnown RBP15.29■□□□□ 0.04
SS18-216ENST00000580751 ADGRD1Q6QNK2 874 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 CRTC3Q6UUV7 619 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 PACS1Q6VY07 963 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 DBX2Q6ZNG2 339 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 SDCCAG8Q86SQ7 713 aaPredicted RBP15.29■□□□□ 0.04
SS18-216ENST00000580751 KCNMB4Q86W47 210 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 NAXDQ8IW45 347 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 SLC25A45Q8N413 288 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 RASGEF1AQ8N9B8 481 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 MTBPQ96DY7 904 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 TCF12Q99081 682 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 DUSP23Q9BVJ7 150 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 PPANQ9NQ55 473 aaKnown RBP15.29■□□□□ 0.04
SS18-216ENST00000580751 NLGN3Q9NZ94 848 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 TXNDC16Q9P2K2 825 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 PSMC3IPQ9P2W1 217 aaPredicted RBP15.29■□□□□ 0.04
SS18-216ENST00000580751 GPR34Q9UPC5 381 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 DOLKQ9UPQ8 538 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 VPS9D1Q9Y2B5 631 aa15.29■□□□□ 0.04
SS18-216ENST00000580751 GOLGA8KD6RF30 607 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 F8W8V4 182 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 QSOX1O00391 747 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 TPP1O14773 563 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 SLC30A4O14863 429 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 FAM155BO75949 473 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 AP2A2O94973 939 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 ATP1B2P14415 290 aaPredicted RBP15.28■□□□□ 0.04
SS18-216ENST00000580751 VCLP18206 1134 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 OGNP20774 298 aaKnown RBP15.28■□□□□ 0.04
SS18-216ENST00000580751 PMLP29590 882 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 GP5P40197 560 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 CSE1LP55060 971 aaKnown RBP15.28■□□□□ 0.04
SS18-216ENST00000580751 B4GALNT1Q00973 533 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 CTBSQ01459 385 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 C1orf61Q13536 156 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 BCL7AQ4VC05 210 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 TEDDM1Q5T9Z0 273 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 GRTP1Q5TC63 336 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 AGBL2Q5U5Z8 902 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 LVRNQ6Q4G3 990 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 CAPN12Q6ZSI9 719 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 CHST15Q7LFX5 561 aaPredicted RBP15.28■□□□□ 0.04
SS18-216ENST00000580751 TAF8Q7Z7C8 310 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 GPBAR1Q8TDU6 330 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 SETD7Q8WTS6 366 aaKnown RBP15.28■□□□□ 0.04
SS18-216ENST00000580751 PAFAH2Q99487 392 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 TIMM29Q9BSF4 260 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 CLPBQ9H078 707 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 TMBIM4Q9HC24 238 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 EURLQ9NYK6 297 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 SENP1Q9P0U3 644 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 MARCH4Q9P2E8 410 aaPredicted RBP15.28■□□□□ 0.04
SS18-216ENST00000580751 DNMT3AQ9Y6K1 912 aaPredicted RBP15.28■□□□□ 0.04
SS18-216ENST00000580751 SPTBN4Q9H254 2564 aa15.28■□□□□ 0.04
SS18-216ENST00000580751 IQANK1A0A1B0GTG1 560 aa15.27■□□□□ 0.04
SS18-216ENST00000580751 KLHL33A6NCF5 533 aa15.27■□□□□ 0.04
SS18-216ENST00000580751 OR2AG2A6NM03 316 aa15.27■□□□□ 0.04
SS18-216ENST00000580751 HMGB1P1B2RPK0 211 aaPredicted RBP15.27■□□□□ 0.04
SS18-216ENST00000580751 RGS16O15492 202 aaPredicted RBP15.27■□□□□ 0.04
SS18-216ENST00000580751 FFAR2O15552 330 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms