RNA–Protein interactions for RNA: ENST00000577880.5

SMCHD1-203, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,951 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-203ENST00000577880 PTGES3Q15185 160 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 RASA2Q15283 850 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 HKDC1Q2TB90 917 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 TEX44Q53QW1 395 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 PLEKHG4Q58EX7 1191 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 FIGNQ5HY92 759 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 TMEM240Q5SV17 173 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 ARMC4Q5T2S8 1044 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 TRIM68Q6AZZ1 485 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 SLC8B1Q6J4K2 584 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 FIP1L1Q6UN15 594 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 HSDL2Q6YN16 418 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 THAP5Q7Z6K1 395 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 ARPINQ7Z6K5 226 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 TMCO2Q7Z6W1 182 aaPredicted RBP2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 SERPINA9Q86WD7 417 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 PAQR7Q86WK9 346 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 ZC3H7AQ8IWR0 971 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 ZNF100Q8IYN0 542 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 C17orf53Q8N3J3 647 aaPredicted RBP2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 SPATA4Q8NEY3 305 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 ATG4AQ8WYN0 398 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 DAZLQ92904 295 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 UCN3Q969E3 161 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 ELMO3Q96BJ8 720 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 MIEF2Q96C03 454 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 MMABQ96EY8 250 aaPredicted RBP2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 FAM111AQ96PZ2 611 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 CHP1Q99653 195 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 SLC17A9Q9BYT1 436 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 UNKQ9C0B0 810 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 ZDHHC5Q9C0B5 715 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 ATG10Q9H0Y0 220 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 SEMA4AQ9H3S1 761 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 EQTNQ9NQ60 294 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 PRDM8Q9NQV8 689 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 BLOC1S4Q9NUP1 217 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 PIH1D1Q9NWS0 290 aaKnown RBP2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 GPR160Q9UJ42 338 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 DGKBQ9Y6T7 804 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 V9GYQ6 96 aa2.9□□□□□ -1.95
SMCHD1-203ENST00000577880 H3BNC9 293 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 CDC7O00311 574 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 NR5A2O00482 541 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 SLC28A2O43868 658 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 CNOT3O75175 753 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 STX11O75558 287 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 LRIG2O94898 1065 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 OR6B1O95007 311 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 CTDNEP1O95476 244 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 THRAP10827 490 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 IRF2P14316 349 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 PSMA4P25789 261 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 ASMTP46597 345 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 TOB1P50616 345 aaPredicted RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 ZNF41P51814 821 aaPredicted RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 AFF3P51826 1226 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 KHDRBS1Q07666 443 aaKnown RBP eCLIP2.89□□□□□ -1.952e-6■□□□□ 8.4
SMCHD1-203ENST00000577880 ECM1Q16610 540 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 DNAL1Q4LDG9 190 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 ZNF805Q5CZA5 627 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 ZNF542PQ5EBM4 170 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 LRRC73Q5JTD7 316 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 TCTE1Q5JU00 501 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 TYW3Q6IPR3 259 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 C11orf63Q6NUN7 778 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 LCTLQ6UWM7 567 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 CES3Q6UWW8 571 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 CEACAM20Q6UY09 585 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 GPR180Q86V85 440 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 CIR1Q86X95 450 aaPredicted RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 PHF13Q86YI8 300 aaPredicted RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 SLC5A8Q8N695 610 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 PTGR2Q8N8N7 351 aaPredicted RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 COX18Q8N8Q8 333 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 GOT1L1Q8NHS2 421 aaPredicted RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 ZDHHC1Q8WTX9 485 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 RLN3Q8WXF3 142 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 NKD1Q969G9 470 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 ARMC5Q96C12 935 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 MS4A4AQ96JQ5 239 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 CNDP2Q96KP4 475 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 TCF12Q99081 682 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 PTPN18Q99952 460 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 B3GNT5Q9BYG0 378 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 ALG9Q9H6U8 611 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 RC3H2Q9HBD1 1191 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 CNTN3Q9P232 1028 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 FNIP2Q9P278 1114 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 PCDHGA2Q9Y5H1 932 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 COPG1Q9Y678 874 aaKnown RBP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 NUMBLQ9Y6R0 609 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 LOC100653049A0A140TA62 436 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 SMIM31A0A1B0GVY4 71 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 MYADML2A6NDP7 307 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 TRIM64A6NGJ6 449 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 C9IYK1 514 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 DDX3XO00571 662 aaKnown RBP eCLIP2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 MATN3O15232 486 aa2.89□□□□□ -1.95
SMCHD1-203ENST00000577880 ATP8B1O43520 1251 aa2.89□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms