RNA–Protein interactions for RNA: ENST00000577246.5

COPS3-214, Transcript of COP9 signalosome subunit 3, humanhuman

TSL 2

Gene COPS3, Length 639 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPS3-214ENST00000577246 VPS35Q96QK1 796 aa13.07□□□□□ -0.32
COPS3-214ENST00000577246 SMAD5Q99717 465 aaKnown RBP13.07□□□□□ -0.32
COPS3-214ENST00000577246 MAP3K3Q99759 626 aa13.07□□□□□ -0.32
COPS3-214ENST00000577246 ZNF670Q9BS34 389 aa13.07□□□□□ -0.32
COPS3-214ENST00000577246 NUDT9Q9BW91 350 aa13.07□□□□□ -0.32
COPS3-214ENST00000577246 CHST8Q9H2A9 424 aa13.07□□□□□ -0.32
COPS3-214ENST00000577246 TRIM10Q9UDY6 481 aa13.07□□□□□ -0.32
COPS3-214ENST00000577246 TCFL5Q9UL49 500 aa13.07□□□□□ -0.32
COPS3-214ENST00000577246 RP1L1Q8IWN7 2480 aaPredicted RBP13.06□□□□□ -0.32
COPS3-214ENST00000577246 ZNF106Q9H2Y7 1883 aaKnown RBP13.06□□□□□ -0.32
COPS3-214ENST00000577246 OR5K3A6NET4 321 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 ANKUB1A6NFN9 424 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 MEN1O00255 615 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 MAP3K7O43318 606 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 MTX2O75431 263 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 CBX6O95503 412 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 IGHEP01854 428 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 SLC4A1P02730 911 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 PRKCIP41743 596 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 PPP1CAP62136 330 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 DMPKQ09013 629 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 MMRN1Q13201 1228 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 GPS2Q13227 327 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 GALNT3Q14435 633 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 NAA30Q147X3 362 aaPredicted RBP13.06□□□□□ -0.32
COPS3-214ENST00000577246 LYPLAL1Q5VWZ2 237 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 TXNRD3NBQ6F5E7 133 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 CCDC70Q6NSX1 233 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 ZNF571Q7Z3V5 609 aaPredicted RBP13.06□□□□□ -0.32
COPS3-214ENST00000577246 TMC3Q7Z5M5 1100 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 AMZ2Q86W34 360 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 RAB43Q86YS6 212 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 RBMXL3Q8N7X1 1067 aaKnown RBP13.06□□□□□ -0.32
COPS3-214ENST00000577246 ENDOVQ8N8Q3 282 aaKnown RBP13.06□□□□□ -0.32
COPS3-214ENST00000577246 FAM71BQ8TC56 605 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 TM9SF4Q92544 642 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 EID2BQ96D98 161 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 HDAC11Q96DB2 347 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 SNRNP40Q96DI7 357 aaKnown RBP13.06□□□□□ -0.32
COPS3-214ENST00000577246 CLIP3Q96DZ5 547 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 IP6K3Q96PC2 410 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 PHF12Q96QT6 1004 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 ISCUQ9H1K1 167 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 SYTL2Q9HCH5 934 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 ANO10Q9NW15 660 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 HRASLS2Q9NWW9 162 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 SOHLH2Q9NX45 425 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 AIPL1Q9NZN9 384 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 ANAPC7Q9UJX3 599 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 SHOC2Q9UQ13 582 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 B3GNT3Q9Y2A9 372 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 PADI2Q9Y2J8 665 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 ZNF711Q9Y462 761 aa13.06□□□□□ -0.32
COPS3-214ENST00000577246 A6NL46 340 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 DDX3XO00571 662 aaKnown RBP eCLIP13.05□□□□□ -0.321e-11■■■■■ 78.4
COPS3-214ENST00000577246 MMP2P08253 660 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 ITGA1P56199 1179 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 PER3P56645 1201 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 ADCY2Q08462 1091 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 TMEM115Q12893 351 aaPredicted RBP13.05□□□□□ -0.32
COPS3-214ENST00000577246 DPYSL3Q14195 570 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 PDK2Q15119 407 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 RPE65Q16518 533 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 ZDHHC20Q5W0Z9 365 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 C11orf96Q7Z7L8 435 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 DSELQ8IZU8 1212 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 BEND7Q8N7W2 519 aaPredicted RBP13.05□□□□□ -0.32
COPS3-214ENST00000577246 KCTD6Q8NC69 237 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 ZFPM2Q8WW38 1151 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 ZNF501Q96CX3 271 aaPredicted RBP13.05□□□□□ -0.32
COPS3-214ENST00000577246 C17orf62Q9BQA9 187 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 DPH2Q9BQC3 489 aaPredicted RBP13.05□□□□□ -0.32
COPS3-214ENST00000577246 ILKAPQ9H0C8 392 aaPredicted RBP13.05□□□□□ -0.32
COPS3-214ENST00000577246 CBX8Q9HC52 389 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.05□□□□□ -0.322e-10■■■□□ 14.6
COPS3-214ENST00000577246 DTLQ9NZJ0 730 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 WDR37Q9Y2I8 494 aa13.05□□□□□ -0.32
COPS3-214ENST00000577246 DNMT3AQ9Y6K1 912 aaPredicted RBP13.05□□□□□ -0.32
COPS3-214ENST00000577246 C9J4A7 227 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 MYO1FO00160 1098 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 MATN2O00339 956 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 KRT86O43790 486 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 IPO13O94829 963 aaKnown RBP13.04□□□□□ -0.32
COPS3-214ENST00000577246 CD48P09326 243 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 BPIP17213 487 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 RIPPLY3P57055 190 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 PRKAA1Q13131 559 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 XRCC4Q13426 336 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 GPR19Q15760 415 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 PLEKHS1Q5SXH7 462 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 ZFYVE27Q5T4F4 411 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 C1QL3Q5VWW1 255 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 SASS6Q6UVJ0 657 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 TTC30BQ8N4P2 665 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 CLEC1AQ8NC01 280 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 GPR150Q8NGU9 434 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 C19orf60Q96EN9 201 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 FER1L6-AS2Q96M78 137 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 TRIB3Q96RU7 358 aa13.04□□□□□ -0.32
COPS3-214ENST00000577246 DHRS4Q9BTZ2 278 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms