RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 AMZ1Q400G9 498 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 SIRPB2Q5JXA9 342 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 PDPK2PQ6A1A2 396 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 DARS2Q6PI48 645 aaKnown RBP7.35□□□□□ -1.23
NUP88-205ENST00000572809 KDELC1Q6UW63 502 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 USP53Q70EK8 1073 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 RAB11FIP2Q7L804 512 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 PEX26Q7Z412 305 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 SPRED1Q7Z699 444 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 PDZD3Q86UT5 571 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 PIM3Q86V86 326 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 TMEM139Q8IV31 216 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 TXLNBQ8N3L3 684 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 FBXO39Q8N4B4 442 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 SLC25A41Q8N5S1 370 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 TRAM1L1Q8N609 369 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 SPC24Q8NBT2 197 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 ACTL9Q8TC94 416 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 PATE1Q8WXA2 126 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 TP53INP1Q96A56 240 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 LIN37Q96GY3 246 aaPredicted RBP7.35□□□□□ -1.23
NUP88-205ENST00000572809 NAF1Q96HR8 494 aaKnown RBP7.35□□□□□ -1.23
NUP88-205ENST00000572809 QKIQ96PU8 341 aaKnown RBP eCLIP7.35□□□□□ -1.23
NUP88-205ENST00000572809 HERPUD2Q9BSE4 406 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 ZSCAN5AQ9BUG6 496 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 OSBPL8Q9BZF1 889 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 FOXP3Q9BZS1 431 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 ADAM19Q9H013 955 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 CARD9Q9H257 536 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 TRABDQ9H4I3 376 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 C10orf88Q9H8K7 445 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 EPB41L5Q9HCM4 733 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 BPIFA1Q9NP55 256 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 ASCL3Q9NQ33 180 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 THSD1Q9NS62 852 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 ATXN10Q9UBB4 475 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 ZNF711Q9Y462 761 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 PRKAB1Q9Y478 270 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 SPO11Q9Y5K1 396 aa7.35□□□□□ -1.23
NUP88-205ENST00000572809 PCYT1BQ9Y5K3 369 aaPredicted RBP7.35□□□□□ -1.23
NUP88-205ENST00000572809 ANKRD11Q6UB99 2663 aaPredicted RBP7.34□□□□□ -1.23
NUP88-205ENST00000572809 APC2O95996 2303 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 ACACAQ13085 2346 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 DMXL2Q8TDJ6 3036 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 PKD1L2Q7Z442 2459 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 MACROD2A1Z1Q3 448 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 PMS2P1A4D2B8 440 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 GRID2IPA4D2P6 1211 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 GOLGA6L6A8MZA4 724 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 D6RAR5 112 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 F5H423 210 aaPredicted RBP7.34□□□□□ -1.23
NUP88-205ENST00000572809 PLD2O14939 933 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 AURKAO14965 403 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 GRID2O43424 1007 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 RGS9O75916 674 aaPredicted RBP7.34□□□□□ -1.23
NUP88-205ENST00000572809 ANXA9O76027 345 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 CPNE6O95741 557 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 AGTP01019 485 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 SLC4A1P02730 911 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 RBP3P10745 1247 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 ZNF8P17098 575 aaPredicted RBP7.34□□□□□ -1.23
NUP88-205ENST00000572809 ATF4P18848 351 aaPredicted RBP7.34□□□□□ -1.23
NUP88-205ENST00000572809 HLA-DPA1P20036 260 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 CD1CP29017 333 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 PTPN7P35236 360 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 UGT1A5P35504 534 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 HMGCLP35914 325 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 GEMP55040 296 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 DCDC1P59894 354 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 EIF3EP60228 445 aaKnown RBP7.34□□□□□ -1.23
NUP88-205ENST00000572809 PRPSAP1Q14558 356 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 NR1D2Q14995 579 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 SLC1A5Q15758 541 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 CLPPQ16740 277 aaPredicted RBP7.34□□□□□ -1.23
NUP88-205ENST00000572809 ZNF569Q5MCW4 686 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 ANKRD20A2Q5SQ80 823 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 ZNF648Q5T619 568 aaPredicted RBP7.34□□□□□ -1.23
NUP88-205ENST00000572809 ANKRD20A1Q5TYW2 823 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 ANKRD20A3Q5VUR7 823 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 ZDHHC20Q5W0Z9 365 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 ALS2CLQ60I27 953 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 ITPRIPL1Q6GPH6 555 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 AADACL2Q6P093 401 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 TMPRSS9Q7Z410 1059 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 B3GNT8Q7Z7M8 397 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 ADGRG6Q86SQ4 1221 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 CDKL3Q8IVW4 592 aaPredicted RBP7.34□□□□□ -1.23
NUP88-205ENST00000572809 SPACA3Q8IXA5 215 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 SYCE1Q8N0S2 351 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 UBL4BQ8N7F7 174 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 LRRC57Q8N9N7 239 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 IPMKQ8NFU5 416 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 ALG3Q92685 438 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 GLYATL1Q969I3 302 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 OXNAD1Q96HP4 312 aaPredicted RBP7.34□□□□□ -1.23
NUP88-205ENST00000572809 SEC16BQ96JE7 1060 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 PLEKHG4BQ96PX9 1271 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 TRIM56Q9BRZ2 755 aaKnown RBP7.34□□□□□ -1.23
NUP88-205ENST00000572809 DPH1Q9BZG8 443 aa7.34□□□□□ -1.23
NUP88-205ENST00000572809 OR2AG1Q9H205 316 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms