RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ACAA1P09110 424 aaPredicted RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 CYP19A1P11511 503 aaPredicted RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 ODC1P11926 461 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 DARSP14868 501 aaKnown RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 VEGFAP15692 232 aaPredicted RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 NPR1P16066 1061 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 CCNE1P24864 410 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 HTR1BP28222 390 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 TYK2P29597 1187 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 PPIFP30405 207 aaKnown RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 CTNNB1P35222 781 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 DPP6P42658 865 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 MAGEA1P43355 309 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 PXNP49023 591 aaPredicted RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 ZNF134P52741 427 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 COPB1P53618 953 aaKnown RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 ATXN3P54252 364 aaPredicted RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 AIF1P55008 147 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 PPP2R2BQ00005 443 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 TLE2Q04725 743 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 ELP6Q0PNE2 266 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 GPM6BQ13491 265 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 THOC5Q13769 683 aaKnown RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 MAPK6Q16659 721 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 TSTQ16762 297 aaKnown RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 SLC9B1Q4ZJI4 515 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 ZNF805Q5CZA5 627 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 CCNJQ5T5M9 372 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 SLC36A4Q6YBV0 504 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 IDO2Q6ZQW0 420 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 ZNF551Q7Z340 670 aaPredicted RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 KCTD20Q7Z5Y7 419 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 KBTBD6Q86V97 674 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 METTL23Q86XA0 190 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 TUSC5Q8IXB3 177 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 MINDY2Q8NBR6 621 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 EXD1Q8NHP7 514 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 HCAR2Q8TDS4 363 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 NSMCE1Q8WV22 266 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 DNAJA4Q8WW22 397 aaPredicted RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 PIGKQ92643 395 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 THRSPQ92748 146 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 SLC25A36Q96CQ1 311 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 HAUS1Q96CS2 278 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 IQCDQ96DY2 449 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 PHF21BQ96EK2 531 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 ZDHHC12Q96GR4 267 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 PIWIL1Q96J94 861 aaKnown RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 FCRL4Q96PJ5 515 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 PSD2Q9BQI7 771 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 MTG1Q9BT17 334 aaPredicted RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 PTDSS2Q9BVG9 487 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 TRIM54Q9BYV2 358 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 FAM192AQ9GZU8 254 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 MAGEH1Q9H213 219 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 OR51V1Q9H2C8 321 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 CUEDC2Q9H467 287 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 ARMT1Q9H993 441 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 IL26Q9NPH9 171 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 XPR1Q9UBH6 696 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 CPA4Q9UI42 421 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 GMEB2Q9UKD1 530 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 ST3GAL5Q9UNP4 418 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 DTX4Q9Y2E6 619 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 SAMHD1Q9Y3Z3 626 aaKnown RBP5.07□□□□□ -1.6
VPS35-205ENST00000563984 WNT6Q9Y6F9 365 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 SPACA6W5XKT8 324 aa5.07□□□□□ -1.6
VPS35-205ENST00000563984 MIA2Q96PC5 1412 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 TDRD9Q8NDG6 1382 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 KIF21AQ7Z4S6 1674 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 EFCAB10A6NFE3 127 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 ZSCAN5BA6NJL1 495 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 OR6C75A6NL08 312 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 H0YJX3 145 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 GTPBP1O00178 669 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 PGRMC1O00264 195 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 RASGRF2O14827 1237 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 AIM2O14862 343 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 SYN3O14994 580 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 ANGPT2O15123 496 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 SLC16A3O15427 465 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 TBC1D4O60343 1298 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 PLA2G6O60733 806 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 RBMXL2O75526 392 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 RASAL1O95294 804 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 PRAMEF12O95522 483 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 ONECUT2O95948 504 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 TFRCP02786 760 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 ERVK-10P10266 1014 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 UMPSP11172 480 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 CYP2B6P20813 491 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 CYP3A5P20815 502 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 CPN2P22792 545 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 ITGB8P26012 769 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 PPP2R1AP30153 589 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 ALDH9A1P49189 494 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 ALDH7A1P49419 539 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 PPP5CP53041 499 aa5.06□□□□□ -1.6
VPS35-205ENST00000563984 SUCLG1P53597 346 aaKnown RBP5.06□□□□□ -1.6
VPS35-205ENST00000563984 NLRP11P59045 1033 aaKnown RBP5.06□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms