RNA–Protein interactions for RNA: ENST00000558428.5

SMAD3-205, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 554 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-205ENST00000558428 LINC00615Q96LM1 132 aaPredicted RBP12.14□□□□□ -0.47
SMAD3-205ENST00000558428 TRIM56Q9BRZ2 755 aaKnown RBP12.14□□□□□ -0.47
SMAD3-205ENST00000558428 STN1Q9H668 368 aaKnown RBP12.14□□□□□ -0.47
SMAD3-205ENST00000558428 SCHIP1Q9P0W5 487 aaPredicted RBP12.14□□□□□ -0.47
SMAD3-205ENST00000558428 FAM8A1Q9UBU6 413 aa12.14□□□□□ -0.47
SMAD3-205ENST00000558428 CLCA2Q9UQC9 943 aa12.14□□□□□ -0.47
SMAD3-205ENST00000558428 NEUROG3Q9Y4Z2 214 aa12.14□□□□□ -0.47
SMAD3-205ENST00000558428 KIF26BQ2KJY2 2108 aa12.14□□□□□ -0.47
SMAD3-205ENST00000558428 CEP295Q9C0D2 2601 aa12.14□□□□□ -0.47
SMAD3-205ENST00000558428 FAM237BA0A1B0GVD1 139 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 FAM221BA6H8Z2 402 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 KLHL33A6NCF5 533 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 SMAPO00193 183 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 CASC3O15234 703 aaKnown RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 PPM1DO15297 605 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 CD3EAPO15446 510 aaKnown RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 OR1I1O60431 355 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 AP2A2O94973 939 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 SEC31AO94979 1220 aaKnown RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 RPLP0P05388 317 aaKnown RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 BRAFP15056 766 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 PAMP19021 973 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 ARNTP27540 789 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 ALDH4A1P30038 563 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 FASLGP48023 281 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 ITGA8P53708 1063 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 CCL7P80098 99 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 SPIDRQ14159 915 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 SEMA3AQ14563 771 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 WHAMMP3Q1A5X7 153 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 DNAJC21Q5F1R6 531 aaKnown RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 KIAA0930Q6ICG6 404 aaPredicted RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 HIBCHQ6NVY1 386 aaPredicted RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 ABRAXAS1Q6UWZ7 409 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 WASH2PQ6VEQ5 465 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 PACS1Q6VY07 963 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 FAM83HQ6ZRV2 1179 aaPredicted RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 ZNF572Q7Z3I7 529 aaPredicted RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 ZNF438Q7Z4V0 828 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 SPRED1Q7Z699 444 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 LDB1Q86U70 411 aaPredicted RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 TRIM48Q8IWZ4 208 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 AGGF1Q8N302 714 aaeCLIP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 HM13Q8TCT9 377 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 SIGLEC10Q96LC7 697 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 CCM2Q9BSQ5 444 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 LRRN3Q9H3W5 708 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 VPS37BQ9H9H4 285 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 SARS2Q9NP81 518 aaKnown RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 WASH6PQ9NQA3 447 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 MARCH4Q9P2E8 410 aaPredicted RBP12.13□□□□□ -0.47
SMAD3-205ENST00000558428 CPNE7Q9UBL6 633 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 PSMD13Q9UNM6 376 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 SNX24Q9Y343 169 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 MSRB2Q9Y3D2 182 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 PRSS21Q9Y6M0 314 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 RPS6KL1Q9Y6S9 549 aa12.13□□□□□ -0.47
SMAD3-205ENST00000558428 COL27A1Q8IZC6 1860 aaPredicted RBP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 A0A1W2PQM1 296 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 OR52A4PA6NMU1 304 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 GOLGA8KD6RF30 607 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 GOLGA8TH3BQL2 631 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 QSOX1O00391 747 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 NTN3O00634 580 aaPredicted RBP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 NDC80O14777 642 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 ZW10O43264 779 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 BANF1O75531 89 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 TCEA3O75764 348 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 USP1O94782 785 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 VIPP01282 170 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 OR56A5P0C7T3 313 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 HALP42357 657 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 GPR3P46089 330 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 RPL21P46778 160 aaKnown RBP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 ARCN1P48444 511 aaKnown RBP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 PPM1FP49593 454 aaPredicted RBP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 TTPAP49638 278 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 OR1D5P58170 312 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 UBE2IP63279 158 aaKnown RBP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 DHX9Q08211 1270 aaKnown RBP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 TARDBPQ13148 414 aaKnown RBP eCLIP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 NR1D2Q14995 579 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 CLCA4Q14CN2 919 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 BBS9Q3SYG4 887 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 AMZ1Q400G9 498 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 ANKRD20A4Q4UJ75 823 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 CHCHD2P9Q5T1J5 151 aaPredicted RBP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 AGAP9Q5VTM2 703 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 CDCP2Q5VXM1 449 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 METRNLQ641Q3 311 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 MRNIPQ6NTE8 343 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 CCNI2Q6ZMN8 369 aaPredicted RBP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 RBM44Q6ZP01 1051 aaKnown RBP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 TMEM135Q86UB9 458 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 ZNF761Q86XN6 746 aaPredicted RBP12.12□□□□□ -0.47
SMAD3-205ENST00000558428 CFAP206Q8IYR0 622 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 CACTIN-AS1Q8N1I8 211 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 DCBLD1Q8N8Z6 715 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 AVL9Q8NBF6 648 aa12.12□□□□□ -0.47
SMAD3-205ENST00000558428 KIF18AQ8NI77 898 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms